MSigDB gene sets for multiple organisms in a tidy data format
☆91Aug 20, 2026Updated 2 months ago
Alternatives and similar repositories for msigdbr
Users that are interested in msigdbr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Gene set variation analysis☆248Updated this week
- Fast Gene Set Enrichment Analysis☆461Sep 22, 2026Updated last month
- Use batch balanced KNN (BBKNN) in R☆14Sep 9, 2025Updated last year
- ☆10Jan 21, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Molecular Signatures Database (MSigDB) in a tidy data frame☆27Oct 16, 2026Updated 3 weeks ago
- Gene orthologs for model organisms in a tidy data format☆16Sep 29, 2022Updated 4 years ago
- An R package to plot interactive three-way differential expression analysis☆40Jan 14, 2026Updated 9 months ago
- HGNC Comparison of Orthology Predictions (HCOP)☆15Mar 22, 2018Updated 8 years ago
- Make Complex Heatmaps☆1,561Apr 2, 2026Updated 7 months ago
- anor: an annotation and visualization system based on R and Shiny framework☆32Apr 20, 2020Updated 6 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Venn Diagram by ggplot2, with really easy-to-use API.☆182Oct 13, 2025Updated last year
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆14Dec 6, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆27Aug 31, 2026Updated 2 months ago
- eVITTA: an easy Visualization and Inference Toolbox for Transcriptome Analysis☆12Mar 23, 2024Updated 2 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- Tidy up computational biology objects☆50Feb 1, 2019Updated 7 years ago
- ☆25Feb 20, 2022Updated 4 years ago
- Raster geoms for ggplot2☆240Jun 6, 2023Updated 3 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆244Mar 2, 2026Updated 8 months ago
- Explore the cancer relevance of your gene list☆55Aug 11, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆557Updated this week
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆53Jan 21, 2026Updated 9 months ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Visualization of Functional Enrichment Result☆259Oct 9, 2026Updated 3 weeks ago
- R client for the OmniPath web service☆176Updated this week
- Publication-ready volcano plots with enhanced colouring and labeling☆472Aug 31, 2026Updated 2 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆60Jan 12, 2024Updated 2 years ago
- Layered enrichment analysis tool enables facile enrichment using various statistics at once.☆20Jun 10, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Oct 17, 2019Updated 7 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆347Updated this week
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆13Jul 31, 2026Updated 3 months ago
- ☆11Jun 23, 2026Updated 4 months ago
- Identify and correct invalid gene symbols☆63Updated this week
- Transcript quantification import for modular pipelines☆146Sep 28, 2026Updated last month
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆505Feb 25, 2026Updated 8 months ago