Teichlab / bracerLinks
BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
☆42Updated 11 months ago
Alternatives and similar repositories for bracer
Users that are interested in bracer are comparing it to the libraries listed below
Sorting:
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆68Updated this week
- ARCHS4 RNA-seq processing scripts and web server pages.☆57Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- Explore and download data from the recount3 project☆35Updated 2 months ago
- ☆58Updated 11 months ago
- ☆43Updated last year
- ☆34Updated 6 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated last year
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆76Updated 2 weeks ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Using BCR and expression for sequence embedding☆24Updated this week
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- ☆69Updated 7 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 4 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆31Updated 7 years ago
- ☆60Updated 4 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆50Updated 2 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 5 years ago
- ☆35Updated 4 months ago
- Fast motif matching in R☆46Updated last year
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- ☆44Updated 9 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago