Teichlab / bracerLinks
BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
☆42Updated last year
Alternatives and similar repositories for bracer
Users that are interested in bracer are comparing it to the libraries listed below
Sorting:
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- ☆59Updated last year
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated last year
- ☆44Updated 10 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ☆34Updated 6 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Fast motif matching in R☆46Updated last year
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆68Updated this week
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Using BCR and expression for sequence embedding☆25Updated 3 weeks ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆58Updated 4 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆31Updated 7 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- ☆43Updated last year
- scNMT-seq gastrulation☆42Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Easy and comprehensive biological network reconstruction and analysis☆31Updated 11 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆35Updated 6 months ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- binned motif enrichment analysis and visualisation☆41Updated last month
- Code related to the Celligner manuscript☆46Updated 4 years ago
- A shell to facilitate loading / running CIBERSORT software in structured environments☆26Updated 7 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆78Updated this week
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆87Updated 5 months ago