Alternatives and similar repositories for malid

Users that are interested in malid are comparing it to the libraries listed below

• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆43Updated 11 months ago
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 5 years ago
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆57Updated 2 years ago
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆19Updated last year
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆65Updated last month
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆89Updated 3 weeks ago
• cnio-bu / beyondcell
  Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …
  ☆57Updated last year
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆59Updated 8 months ago
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆25Updated last month
• DanHanh / scLinear
  ☆19Updated last year
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆20Updated last month
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆62Updated last month
• oscar-franzen / PanglaoDB
  metadata and data from the database
  ☆41Updated 5 years ago
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• TebaldiLab / cellmarkeraccordion
  ☆16Updated 2 weeks ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆83Updated last year
• LukszaLab / NeoantigenEditing
  ☆23Updated 3 years ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆32Updated 7 months ago
• DavisLaboratory / vissE
  An R/Bioconductor package to identify higher-order molecular phenotypes
  ☆19Updated 2 years ago
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆39Updated last week
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆45Updated this week
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆76Updated last year
• theislab / atlas-feature-selection-benchmark
  Code for "Feature selection methods affect the performance of scRNA-seq data integration and querying"
  ☆30Updated 10 months ago
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆30Updated last year
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆69Updated last month
• ajwilk / 2020_Wilk_COVID
  Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…
  ☆49Updated 4 years ago
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆16Updated 6 years ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆27Updated 3 years ago