Alternatives and similar repositories for malid

Users that are interested in malid are comparing it to the libraries listed below

• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆43Updated 9 months ago
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 5 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆57Updated last year
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago
• jasonHKU0907 / proteome-phenome-atlas
  ☆71Updated 9 months ago
• mcgilldinglab / UNAGI
  UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.
  ☆42Updated 2 weeks ago
• lanagarmire / Asgard
  ☆44Updated last year
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆63Updated last month
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆19Updated last year
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆88Updated 3 weeks ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆20Updated last week
• Svvord / iMAP
  A novel unsupervised batch removal framework, called iMAP, based on neural networks.
  ☆35Updated 3 years ago
• cnio-bu / beyondcell
  Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …
  ☆55Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆97Updated 11 months ago
• jshilts / shilts-et-al-2022-immunoreceptors
  Supporting data files and code for the publication by Shilts et al.
  ☆31Updated 3 years ago
• SmritiChawla / Precily
  ☆31Updated 3 years ago
• kuwisdelu / Cardinal
  Mass spectrometry imaging toolbox
  ☆66Updated 3 weeks ago
• xleizi / easySCF
  ☆47Updated last month
• WJPina / HUSI
  A human universal senescence index to evaluate celluar senescence
  ☆31Updated 2 months ago
• ajwilk / 2020_Wilk_COVID
  Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…
  ☆49Updated 4 years ago
• gmstanle / coronary-progenitor-scRNAseq
  ☆13Updated 7 years ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆84Updated 2 years ago
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆39Updated 7 months ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆89Updated 2 months ago
• bm2-lab / MUSIC
  model-based understanding of single-cell CRISPR screening
  ☆26Updated 11 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆57Updated last year
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆25Updated 3 weeks ago
• akiviaho / ST-prostate
  Code required to reproduce the analysis made in Kiviaho et al. 2024
  ☆12Updated last year
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆59Updated last year