netlab-ku / pyPARAGONLinks
PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference
☆11Updated 8 months ago
Alternatives and similar repositories for pyPARAGON
Users that are interested in pyPARAGON are comparing it to the libraries listed below
Sorting:
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Updated last year
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- Network annotation visualization☆18Updated 2 months ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated this week
- Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets☆14Updated this week
- ☆18Updated last year
- Similarity search in heterogeneous knowledge graphs using meta paths.☆27Updated 2 years ago
- ☆23Updated 2 years ago
- Python package to query and analyse UniProt☆25Updated 4 years ago
- This is the public repository for the EPIC tool.☆18Updated 3 years ago
- Connect the dots in networks.☆19Updated 4 years ago
- ☆21Updated 4 months ago
- ☆14Updated 9 years ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)☆19Updated last year
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Updated 4 years ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 3 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Updated 8 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Updated 3 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆25Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- code for Gogleva et al manuscript☆45Updated 2 years ago
- ☆33Updated 2 years ago
- Kdrew's scripts for handling protein complex map data☆14Updated last month
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago