netlab-ku / pyPARAGONLinks
PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference
☆11Updated last year
Alternatives and similar repositories for pyPARAGON
Users that are interested in pyPARAGON are comparing it to the libraries listed below
Sorting:
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- Network annotation visualization☆18Updated 6 months ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated 2 weeks ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Updated 2 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Updated 4 years ago
- This is the public repository for the EPIC tool.☆18Updated 3 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- ☆23Updated 2 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Updated 8 years ago
- Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets☆14Updated 3 weeks ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆29Updated 2 years ago
- ☆38Updated 2 years ago
- ☆18Updated last year
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Python package to query and analyse UniProt☆25Updated 5 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 10 months ago
- ☆10Updated 4 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆33Updated 8 months ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Updated 3 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Updated 4 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 3 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆36Updated last year
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Updated 7 years ago
- ☆19Updated last year
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆11Updated 4 years ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 4 years ago
- Kdrew's scripts for handling protein complex map data☆14Updated 5 months ago