Fast and Optimal Affine-Gap Sequence-to-Graph Alignment
☆35Jul 15, 2026Updated last month
Alternatives and similar repositories for theseus-lib
Users that are interested in theseus-lib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A general technique to reduce memory consumption and improve the performance of gap-affine and dual gap-affine sequence alignment algorit…☆17Jan 22, 2026Updated 7 months ago
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.☆31May 5, 2025Updated last year
- Minipoa: A minimizer-based method for fast and memory-efficient partial order alignment☆18May 23, 2026Updated 3 months ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- General purpose utility related to GAF files☆37Aug 6, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 2 months ago
- Pangenome file formats based on SQLite☆16Updated this week
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 8 months ago
- ☆23Updated this week
- ☆18Jul 21, 2026Updated last month
- plane sweep filtering genome alignments☆24Jul 25, 2026Updated last month
- Multiple sequence alignment of long tandem repeats☆31Jun 23, 2026Updated 2 months ago
- A tool for sniffing out the differences in vari-Ants☆50Aug 10, 2026Updated 2 weeks ago
- WFA-lib: Wavefront alignment algorithm library v2☆225Aug 7, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 7 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Aug 21, 2026Updated last week
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 10 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 11 months ago
- ☆28Jul 13, 2026Updated last month
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆15Jun 29, 2026Updated 2 months ago
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆52Jul 29, 2026Updated last month
- ☆42Oct 6, 2025Updated 10 months ago
- An HLA star-calling tool for PacBio HiFi data types☆23Feb 26, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆136Jul 29, 2026Updated last month
- An extensible and performant aligner and read mapper☆103Jul 27, 2026Updated last month
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated last month
- Genome-in-a-Bottle stratifications for major references☆15Apr 28, 2025Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆44Jul 31, 2026Updated 3 weeks ago
- ☆21Jul 2, 2026Updated last month
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- ☆19May 10, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- ANI based satellite annotation☆29Aug 6, 2026Updated 3 weeks ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆28Updated this week
- ☆16Jan 28, 2026Updated 7 months ago
- ☆27Jun 16, 2026Updated 2 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated last month
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago