VCCRI / FalcoLinks
A quick and flexible single-cell RNA-seq processing framework on the cloud
☆38Updated 5 years ago
Alternatives and similar repositories for Falco
Users that are interested in Falco are comparing it to the libraries listed below
Sorting:
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- ☆18Updated 9 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- ATAC-seq lab for BIOINF545☆25Updated 3 months ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆31Updated 7 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 2 months ago
- An R client for broads firehose pipeline, providing TCGA data sets☆60Updated 5 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 9 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Python package to annotate and visualize gene fusions.☆63Updated 8 months ago
- ☆34Updated 5 years ago
- ☆54Updated 3 months ago
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 5 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Scripts for using scanpy☆36Updated 2 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago