leekgroup / recount-websiteLinks
Code for the Recount project
☆11Updated 8 months ago
Alternatives and similar repositories for recount-website
Users that are interested in recount-website are comparing it to the libraries listed below
Sorting:
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 8 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- Independent Hypothesis Weighting☆15Updated last year
- Bioconductor package for management of multi-assay data☆73Updated 2 weeks ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated 2 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Updated 8 months ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 5 years ago
- Explore design matrices interactively with R/Shiny☆37Updated 4 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆30Updated 4 months ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 2 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 6 years ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- R interface to morpheus.js heatmap widget☆38Updated 4 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- countsimQC - Compare characteristic features of count data sets☆28Updated last month
- DESeq2 or edgeR☆22Updated 8 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Demonstration of the use of an R package to organize a data analysis project☆21Updated 5 years ago
- Source code of the R packge BgeeDB to use data from the Bgee database☆16Updated 6 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- [DEPRECATED] Docker containers for Bioconductor☆49Updated 2 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- Template for building a bioconductor workshop package using github actions☆21Updated 2 months ago
- Toolbox package for organizing and working with TCGA data☆28Updated last month
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 4 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 11 months ago