caleblareau / asap_reproducibilityLinks
Reproducing all analyses and figures for the ASAP-seq paper
☆29Updated 4 years ago
Alternatives and similar repositories for asap_reproducibility
Users that are interested in asap_reproducibility are comparing it to the libraries listed below
Sorting:
- ☆27Updated 4 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Identifying tumor cells at the single-cell level using machine learning☆49Updated last year
- ☆53Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- scWGCNA☆61Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- ☆34Updated 6 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆37Updated 2 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Updated 4 years ago
- Fast motif matching in R☆46Updated last year
- ☆57Updated 7 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago