ome / omero-webLinks
Django-based OMERO.web client
☆23Updated 2 weeks ago
Alternatives and similar repositories for omero-web
Users that are interested in omero-web are comparing it to the libraries listed below
Sorting:
- Browse your OMERO database from within napari.☆40Updated 3 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- A relabeling tool for tiled segmentation with Dask☆17Updated last year
- A napari plugin for zarr backed OME-NGFF images☆43Updated 3 weeks ago
- Python project containing Ice remoting code for OMERO☆27Updated 3 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆22Updated 4 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Updated 3 months ago
- native Python dataclasses for the OME data model☆65Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆63Updated this week
- Command-line client for Fractal☆48Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆48Updated last year
- Raw format to OME-TIFF converter☆56Updated 3 weeks ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆76Updated last week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated last week
- ☆92Updated 3 months ago
- Accurate and efficient spot detection for microscopy data☆117Updated last week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆224Updated this week
- Bio-Formats image file format to raw format converter☆103Updated last month
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- ☆18Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆20Updated 6 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 10 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- napari plugin for trackastra☆17Updated 3 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Updated last year
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated last week