Alternatives and similar repositories for spage2vec

Users that are interested in spage2vec are comparing it to the libraries listed below

• zcang / SpaOTsc
  ☆45Updated 2 months ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 3 months ago
• PeterZZQ / CeSpGRN
  CeSpGRN: Inferring cell specific GRN using single-cell gene expression data
  ☆20Updated last year
• davidbuterez / CellVGAE
  An unsupervised scRNA-seq analysis workflow with graph attention networks
  ☆26Updated 2 years ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆47Updated 2 months ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆110Updated last year
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆70Updated 2 years ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• SindiLab / ACTIVA
  The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…
  ☆11Updated 2 years ago
• LucasESBS / vega
  VEGA: VAE Enhanced by Gene Annotations
  ☆16Updated 3 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆43Updated 2 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• welch-lab / pyliger
  Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
  ☆30Updated 5 months ago
• QuKunLab / MultiomeBenchmarking
  ☆49Updated 7 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 2 years ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated last year
• scverse / spatialdata-notebooks
  ☆60Updated last week
• suinleelab / contrastiveVI
  ☆56Updated last year
• ZJUFanLab / scDeepSort_performance_comparison
  The source code and results for different methods on annotating external testing datsets of human and mouse.
  ☆12Updated 4 years ago
• BiomedicalMachineLearning / Spacell
  ☆26Updated 5 years ago
• theislab / ncem
  Learning cell communication from spatial graphs of cells
  ☆113Updated last year
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆30Updated 11 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆56Updated 3 months ago
• kimmo1019 / scDEC
  Simultaneous deep generative modeling and clustering of single cell genomic data
  ☆32Updated 2 years ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆76Updated 9 months ago
• theislab / scTab
  ☆61Updated last year
• snap-stanford / stellar
  ☆69Updated 2 years ago