Alternatives and similar repositories for data

Users that are interested in data are comparing it to the libraries listed below

• CaiGroup / seqFISH-PLUS
  ☆53Updated 4 years ago
• zcang / SpaOTsc
  ☆47Updated 5 months ago
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆98Updated 10 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆40Updated last year
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆107Updated last week
• prabhakarlab / Banksy_py
  BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …
  ☆72Updated 2 months ago
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆73Updated 2 years ago
• LieberInstitute / HumanPilot
  Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
  ☆91Updated last year
• dpeerlab / ENVI
  ☆52Updated 3 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated this week
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆93Updated 2 years ago
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆25Updated 10 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆76Updated last year
• QuKunLab / SPACEL
  ☆60Updated last year
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆76Updated last year
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆68Updated 2 years ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆101Updated 2 months ago
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆147Updated last month
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆73Updated last year
• shuxiaoc / maxfuse
  ☆57Updated last year
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 8 months ago
• JinmiaoChenLab / SEDR
  ☆66Updated last year
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆106Updated last week
• QuKunLab / SpatialBenchmarking
  ☆128Updated 3 years ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆25Updated last year
• zcang / COMMOT
  ☆127Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆32Updated 5 months ago
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆50Updated last year
• wanglab-broad / CAST
  CAST package
  ☆42Updated last year
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆90Updated last year