Alternatives and similar repositories for data

Users that are interested in data are comparing it to the libraries listed below

• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated last year
• CaiGroup / seqFISH-PLUS
  ☆52Updated 4 years ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 2 years ago
• shuxiaoc / maxfuse
  ☆55Updated last year
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆90Updated 5 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆53Updated this week
• prabhakarlab / Banksy_py
  ☆58Updated 3 weeks ago
• zcang / SpaOTsc
  ☆45Updated last month
• dpeerlab / ENVI
  ☆50Updated 3 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆69Updated last year
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆37Updated 5 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated last month
• wanglab-broad / CAST
  CAST package
  ☆40Updated 9 months ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆86Updated last year
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆90Updated 2 weeks ago
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆74Updated 2 years ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆66Updated last year
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆29Updated 3 months ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆82Updated 3 weeks ago
• YangLabHKUST / STitch3D
  Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
  ☆66Updated last year
• ElementoLab / utag
  ☆38Updated last year
• seqscope / ficture
  ☆36Updated 3 weeks ago
• QuKunLab / SPACEL
  ☆59Updated last year
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆65Updated last year
• aristoteleo / spateo-viewer
  Web application demonstrating 3D modeling of spatial transcriptomics
  ☆21Updated 8 months ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆75Updated last year
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆44Updated 4 years ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆24Updated 2 months ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆59Updated 2 months ago
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆44Updated last year