3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
☆35Oct 10, 2022Updated 3 years ago
Alternatives and similar repositories for Cellpose3D
Users that are interested in Cellpose3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- Build unbiased anatomical templates from individual images☆13Jun 2, 2026Updated last week
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆47Nov 13, 2025Updated 7 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆29Jun 2, 2026Updated last week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆59Apr 29, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Apr 15, 2026Updated last month
- A probabilistic cell typing algorithm for spatial transcriptomics.☆26May 26, 2026Updated 2 weeks ago
- Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data☆33Updated this week
- Read and write files from the BrainGlobe neuroanatomy suite☆15Jun 2, 2026Updated last week
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 14, 2022Updated 3 years ago
- ☆18Feb 10, 2022Updated 4 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- ☆18May 5, 2023Updated 3 years ago
- Brainways☆23Aug 28, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- ABBA, controlled from python☆19Nov 24, 2025Updated 6 months ago
- A draft specification for the nifti-zarr format☆16Dec 5, 2025Updated 6 months ago
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆22Mar 30, 2026Updated 2 months ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- A toolkit for interactive visualization of signal and image processing on Jupyter Notebooks.☆11Mar 31, 2022Updated 4 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Feb 14, 2024Updated 2 years ago
- Linking napari layers with Matplotlib plots☆43Jun 2, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Lectures for a napari training course☆52Aug 30, 2023Updated 2 years ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆149Jun 2, 2026Updated last week
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆23Apr 1, 2025Updated last year
- ☆29Dec 13, 2023Updated 2 years ago
- Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!☆11Jun 22, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆644Mar 29, 2026Updated 2 months ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- ☆25Feb 12, 2026Updated 4 months ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 3 months ago
- A python library for advanced lattice light-sheet image analysis☆21Sep 9, 2020Updated 5 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆20Nov 18, 2025Updated 6 months ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago