stegmaierj / Cellpose3DLinks
3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
☆35Updated 2 years ago
Alternatives and similar repositories for Cellpose3D
Users that are interested in Cellpose3D are comparing it to the libraries listed below
Sorting:
- Tools for distributed alignment of massive images☆86Updated 2 weeks ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆19Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆56Updated 11 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 10 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 5 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated last year
- StarDist plugin for napari☆39Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆80Updated 6 months ago
- ☆23Updated 3 months ago
- Transformer-based cell tracking for live-cell microscopy☆94Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆81Updated 3 weeks ago
- ☆15Updated 2 weeks ago
- 3D shape analysis using deep learning☆27Updated last year
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆38Updated 4 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 5 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- Accurate and efficient spot detection for microscopy data☆100Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 5 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 5 months ago
- ☆37Updated last month
- A python algorithm for tracking cells in 3D time lapse images.☆64Updated 2 weeks ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 7 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆86Updated 3 weeks ago
- A template repo used to make new napari plugins☆27Updated last week
- ☆51Updated 5 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆148Updated this week