stegmaierj / Cellpose3DLinks
3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
☆35Updated 3 years ago
Alternatives and similar repositories for Cellpose3D
Users that are interested in Cellpose3D are comparing it to the libraries listed below
Sorting:
- Tools for distributed alignment of massive images☆90Updated last week
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆48Updated 2 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated last week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 5 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 7 months ago
- MorphoFeatures code and data☆22Updated 2 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- A napari plugin for clustering objects according to their properties.☆88Updated last week
- 3D shape analysis using deep learning☆28Updated 2 months ago
- simple package for augmentation of n-dimensional arrays☆34Updated 2 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- ☆16Updated 3 months ago
- StarDist plugin for napari☆38Updated last year
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆151Updated 2 months ago
- Transformer-based cell tracking for live-cell microscopy☆119Updated 2 weeks ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆83Updated last month
- StarDist plugin for ImageJ☆30Updated 3 years ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆85Updated 3 weeks ago
- A template repo used to make new napari plugins☆30Updated 3 weeks ago
- ☆22Updated 6 months ago
- ☆32Updated 4 months ago
- ☆51Updated 7 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 10 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 2 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 7 months ago
- Multiple file format reading directly into napari using pure Python☆39Updated 2 months ago