SushiLab / omrgc_v2_scriptsLinks
☆11Updated last year
Alternatives and similar repositories for omrgc_v2_scripts
Users that are interested in omrgc_v2_scripts are comparing it to the libraries listed below
Sorting:
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- http://huttenhower.sph.harvard.edu/waafle☆19Updated 7 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- ☆22Updated 5 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆39Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆41Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 2 weeks ago
- ☆18Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 6 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- ☆31Updated 7 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated 11 months ago
- ☆20Updated 8 years ago
- ☆13Updated 7 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆20Updated last year
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- Prophage Activity Estimator☆26Updated last year
- ☆18Updated 3 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆41Updated last year
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last year
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆14Updated 7 months ago
- ☆16Updated 2 years ago
- ☆17Updated 9 months ago
- MAG Circularization Method☆33Updated 3 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆20Updated 9 months ago
- ☆26Updated 2 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago