GerkeLab / TCGAhrdLinks
Homologous recombination deficiency in TCGA PanCancer Atlas
☆28Updated 4 years ago
Alternatives and similar repositories for TCGAhrd
Users that are interested in TCGAhrd are comparing it to the libraries listed below
Sorting:
- ☆47Updated 7 months ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18Updated 2 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆31Updated 5 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆32Updated last year
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆17Updated 9 months ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Bayesian network plot for the enrichment analysis results☆64Updated 10 months ago
- GLASS consortium☆40Updated 5 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 3 weeks ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- ☆86Updated last year
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- ☆44Updated 6 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ☆41Updated 7 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆56Updated 2 years ago
- ☆14Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Quantifying copy number signatures from absolute copy number profiles☆24Updated last month
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- 🧬 Gene analysis toolkit based on R☆57Updated 7 months ago
- ☆20Updated 4 years ago