GerkeLab / TCGAhrdLinks
Homologous recombination deficiency in TCGA PanCancer Atlas
☆28Updated 4 years ago
Alternatives and similar repositories for TCGAhrd
Users that are interested in TCGAhrd are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆47Updated 8 months ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Updated 10 months ago
- An R package to time somatic mutations☆64Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Multiscale embedded gene co-expression network analysis☆54Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆31Updated 5 years ago
- ☆41Updated 7 years ago
- ☆20Updated 4 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- GLASS consortium☆42Updated 5 years ago
- ☆14Updated 7 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Install GISTIC2 by one line code; GISTIC2 docker image☆42Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- Repository for Cibersortx☆60Updated 4 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆32Updated last year
- Dichotomous of innate immune landscape☆17Updated 6 years ago
- ☆30Updated 7 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- ☆39Updated 5 years ago
- ☆86Updated last month
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 5 years ago