GerkeLab / TCGAhrd
Homologous recombination deficiency in TCGA PanCancer Atlas
☆25Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for TCGAhrd
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆19Updated 5 years ago
- ☆20Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- ☆46Updated last year
- ☆40Updated 6 years ago
- Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment☆27Updated last year
- ☆14Updated 9 months ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆25Updated last year
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆14Updated last year
- ☆30Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆51Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated last year
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- Calculating Tumor microenvironment score☆27Updated last year
- ☆18Updated 2 years ago
- ☆17Updated 3 years ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆14Updated last week
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- Quantifying copy number signatures from absolute copy number profiles☆23Updated this week
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆30Updated 4 years ago
- Analysis notebooks and data for AML hierarchies paper☆15Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- A pipeline for scRNA-seq data analysis☆12Updated 10 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- ☆14Updated 2 years ago
- ☆15Updated 5 months ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year