zpliulab / scGENALinks
single cell Gene co-Expression Network Analysis
☆9Updated 2 years ago
Alternatives and similar repositories for scGENA
Users that are interested in scGENA are comparing it to the libraries listed below
Sorting:
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆13Updated 2 years ago
- ☆10Updated 2 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 months ago
- Improved Ribo-seq enables identification of cryptic translation events☆15Updated 7 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 4 months ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆15Updated 5 years ago
- Difference in Intercellular Communication from scRNA-seq data☆21Updated last year
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆15Updated 7 months ago
- ☆16Updated 5 months ago
- Code related to scRNA analysis using the scAmpi workflow☆27Updated last month
- ☆20Updated last year
- Pseudotime Analysis for Bulk Data☆16Updated last year
- ☆19Updated 3 months ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆21Updated last month
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Tools for assessing clustering robustness☆25Updated last week
- Spatial omics analysis toolbox☆14Updated last year
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆9Updated 5 years ago
- Analysis and visualization of RNA-Seq results☆29Updated 2 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- TRUST4 manuscript evaluation☆15Updated 3 years ago
- ☆39Updated 4 years ago
- Computational pipeline to process EasySci-RNA data.☆21Updated last year
- Landscape Single Cell Entropy☆20Updated 4 years ago
- ☆18Updated 4 years ago
- ☆49Updated last year