single cell Gene co-Expression Network Analysis
☆10Sep 6, 2022Updated 3 years ago
Alternatives and similar repositories for scGENA
Users that are interested in scGENA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene Co-expression Network analysis pipeline☆26Jul 3, 2023Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆29Aug 5, 2022Updated 4 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 4 months ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- ☆10Mar 11, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- UHCA☆11Jan 23, 2025Updated last year
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- Do microbiome analysis with dada2 and phyloseq object☆15Oct 9, 2024Updated last year
- detecting spatial patterns of allele-specific expression☆11May 22, 2024Updated 2 years ago
- eQTLHap: a comprehensive eQTL analysis tool.☆11Apr 15, 2021Updated 5 years ago
- Reproducibility Repo for mvTCR paper☆14Apr 2, 2024Updated 2 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆10Oct 31, 2023Updated 2 years ago
- ☆11Sep 22, 2021Updated 4 years ago
- Count HLA alleles in single-cell RNA-seq data☆64Nov 5, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Differential coexpression analysis☆17Aug 9, 2023Updated 3 years ago
- BioCarta pathway images☆11Jan 30, 2026Updated 6 months ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆14Jan 28, 2025Updated last year
- Common Factor Integration & Transfer learning (cFIT) for single cell RNA-seq data☆13Jul 6, 2021Updated 5 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆21Jul 24, 2023Updated 3 years ago
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated 11 months ago
- The single T cell annotation tool for scRNA-seq data☆28Apr 25, 2025Updated last year
- ☆15Jan 23, 2026Updated 6 months ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Updated this week
- R functions underlying OmicsNet☆20Updated this week
- ☆17Jun 15, 2022Updated 4 years ago
- ☆20Jun 16, 2021Updated 5 years ago
- Some examples to analyze mass spectrometry data using MALDIquant☆17Oct 13, 2022Updated 3 years ago
- LLM-Driven Multi-Agent Framework for Automated scRNA-Seq Data Analysis:The LLM-driven multi-agent framework for single-cell RNA sequencin…☆17Jun 11, 2026Updated 2 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆50Sep 1, 2023Updated 2 years ago
- ☆13Sep 30, 2023Updated 2 years ago
- ☆11Aug 11, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for proximity-based methods of link prediction.☆12Aug 11, 2025Updated last year
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆25Jul 11, 2021Updated 5 years ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆27Jun 5, 2018Updated 8 years ago
- Network construction Algorithm☆23Sep 5, 2024Updated last year
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- An R package to query EBI's Ontology Lookup Service (OLS)☆11Aug 8, 2026Updated last week
- Examples of how to use Prefect☆31Sep 26, 2025Updated 10 months ago