Argo: species-resolved profiling of antibiotic resistance genes in complex metagenomes through long-read overlapping
☆15Jul 30, 2026Updated last week
Alternatives and similar repositories for argo
Users that are interested in argo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆32Jun 22, 2026Updated last month
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 4 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆36Apr 10, 2026Updated 4 months ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆22Jul 17, 2026Updated 3 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆315Feb 3, 2026Updated 6 months ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆38Feb 26, 2023Updated 3 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 5 months ago
- ☆15Jun 24, 2026Updated last month
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆78Jul 29, 2026Updated last week
- snapper☆14Jul 8, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 2 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆50Apr 20, 2023Updated 3 years ago
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago
- Open, MIT-licensed food & nutrition science research skills for Claude Code, Codex, and MiniMax Agent — multi-agent literature/systematic…☆24Updated this week
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆75Mar 16, 2025Updated last year
- Graph-based assembly phasing☆99Nov 25, 2025Updated 8 months ago
- ☆13Sep 4, 2017Updated 8 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆75Dec 28, 2019Updated 6 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A hybrid assembly and MAG recovery pipeline (and more!)☆116Updated this week
- Improvement of metagenome-assembled genomes☆57Mar 17, 2020Updated 6 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- ARG normalization by mapping to the ARO ontology.☆68Jul 10, 2026Updated last month
- Rapid comparison and dereplication of genomes☆351Jul 16, 2026Updated 3 weeks ago
- ☆37Apr 15, 2024Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆62Updated this week
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆26Updated this week
- code repo for mobileOG-db☆49Jul 30, 2026Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆61Jul 5, 2026Updated last month
- ☆32Nov 2, 2023Updated 2 years ago
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago