☆12Aug 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for PMiFish
Users that are interested in PMiFish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Jul 12, 2026Updated last month
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated last year
- A generalised, dynamic DNA reference library for metabarcoding of fishes☆19Aug 20, 2026Updated last week
- Run any CLI tool on a Reproducible Isolated Environment ⚙️⚡☆15Updated this week
- Making notes during study 'Numerical Ecology with R second edition'☆25Aug 9, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆22Nov 13, 2019Updated 6 years ago
- Train neural networks based on geographic species occurrences, environmental data and existing IUCN Red List assessments to predict the …☆28Jul 8, 2026Updated last month
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆36Oct 30, 2024Updated last year
- ☆24Feb 23, 2023Updated 3 years ago
- ☆26Jun 13, 2022Updated 4 years ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- Tools for data enhancement and quality control☆33Feb 26, 2026Updated 6 months ago
- Distance denoise by Entropy☆16Oct 17, 2025Updated 10 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆37Jul 15, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- eDNA metabarcoding pipeline☆48Jul 22, 2026Updated last month
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Python implementation of the BCALM algorithm☆15Dec 2, 2016Updated 9 years ago
- ☆12Apr 8, 2021Updated 5 years ago
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 5 years ago
- EukRef curation pipeline☆13May 11, 2021Updated 5 years ago
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- 📦 R package to compute functional diversity indices efficiently☆44Aug 20, 2026Updated last week
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Spatio-temporal trends in habitat suitability from ecological niche models☆15Feb 4, 2026Updated 6 months ago
- Statistical analysis of dissolved organic matter based on high-resolution mass spectrometry☆19Jun 28, 2026Updated 2 months ago
- I do not have time to maintain this anymore! It remains as a sandbox/playground :)☆11May 13, 2024Updated 2 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 3 years ago
- This is a read-only mirror of the CRAN R package repository. rgdal — Bindings for the 'Geospatial' Data Abstraction Library. Homepage: …☆13Jun 1, 2023Updated 3 years ago
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- Repository for all the code associated with the paper "Reconciling biodiversity protection, food production, and climate change mitigatio…☆19Oct 10, 2022Updated 3 years ago
- Multiplex Primer Design☆21Oct 30, 2020Updated 5 years ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆17Jun 26, 2025Updated last year
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆18Dec 30, 2025Updated 8 months ago
- R package for Ecological Networks utility functions and metrics☆11Aug 3, 2026Updated 3 weeks ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 9 years ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 7 months ago
- creating reference databases for amplicon sequencing☆52Jan 13, 2026Updated 7 months ago
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆12Updated this week