rogotoh / PMiFishLinks
☆12Updated last year
Alternatives and similar repositories for PMiFish
Users that are interested in PMiFish are comparing it to the libraries listed below
Sorting:
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 3 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated last year
- dada2 formatted nifH database☆13Updated last year
- ☆51Updated 4 years ago
- ☆79Updated 2 years ago
- ☆13Updated 4 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Updated 3 months ago
- ☆23Updated 6 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆26Updated 5 years ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- FUNGuild: parsing OTUs into functional guilds☆123Updated last year
- SourceTracker2☆81Updated last year
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆17Updated 4 months ago
- Various functions for analysis of microbial community data☆47Updated 2 months ago
- Statistics and visualization for amplicon data☆72Updated 2 years ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆49Updated 2 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆90Updated 2 months ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆50Updated 4 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Using ggtree to build phylogenetic trees☆50Updated last year
- Utilities for community ecology analysis☆19Updated 5 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆84Updated last week
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆47Updated 4 months ago
- ☆14Updated 11 years ago
- R scripts for performing co-occurrence analyses☆35Updated 10 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Sydney Phylogenetics Workshop☆67Updated 5 months ago