Alternatives and similar repositories for CytoTalk

Users that are interested in CytoTalk are comparing it to the libraries listed below

• tanlabcode / CytoTalk
  A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…
  ☆42Updated 10 months ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆57Updated 6 months ago
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆78Updated last year
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆34Updated 4 years ago
• bm2-lab / scLearn
  scLearn：Learning for single cell assignment
  ☆35Updated 7 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated last week
• sqjin / scAI
  An unsupervised approach for the integrative analysis of single-cell multi-omics data
  ☆29Updated 4 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆40Updated 9 months ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆51Updated last year
• zhoujt1994 / scHiCluster
  ☆67Updated last month
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• wycwycpku / RSCORE
  ☆25Updated 3 years ago
• jcao89757 / TESSA
  Mapping the Functional Landscape of TCR Repertoire
  ☆34Updated 3 years ago
• datapplab / AutoClass
  ☆44Updated 3 years ago
• theislab / scArches-reproducibility
  Reproducing result from the paper
  ☆34Updated 4 years ago
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆27Updated 5 years ago
• BIMSBbioinfo / ikarus
  Identifying tumor cells at the single-cell level using machine learning
  ☆48Updated 8 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 10 months ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆103Updated last year
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• saezlab / FootprintMethods_on_scRNAseq
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
  ☆27Updated 5 years ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• cartal / HCA_Heart
  This is the official repository for the Human Cell Atlas Heart project.
  ☆29Updated 4 years ago
• asrhou / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆17Updated 6 months ago
• ggjlab / HCL
  Tools used in Human Cell Landscape(HCL)
  ☆55Updated 4 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆37Updated 4 years ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆74Updated 5 months ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆40Updated 2 years ago
• ShobiStassen / VIA
  trajectory inference
  ☆104Updated 5 months ago
• Pinlyu3 / IReNA-v2
  Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data
  ☆12Updated 3 years ago