Alternatives and similar repositories for HUSI

Users that are interested in HUSI are comparing it to the libraries listed below

• lanagarmire / Asgard
  ☆44Updated last year
• SmritiChawla / Precily
  ☆31Updated 3 years ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆56Updated last year
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆56Updated this week
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆92Updated 9 months ago
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated last year
• ailabstw / scDrug
  scDrug: From scRNA-seq to Drug Repositioning
  ☆35Updated 2 years ago
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆23Updated 2 years ago
• Roy-lab / scMTNI
  ☆30Updated 2 months ago
• ImmucanWP7 / immucan-scdb
  ☆17Updated 2 years ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆26Updated 3 years ago
• yjgeno / GenKI
  ☆18Updated last year
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆26Updated last year
• madilabcode / scNET
  ☆54Updated 3 weeks ago
• mcgilldinglab / UNAGI
  Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.
  ☆39Updated 3 months ago
• QuKunLab / MultiomeBenchmarking
  ☆49Updated 7 months ago
• MedicalGenomicsLab / deconvolution_benchmarking
  ☆21Updated last year
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆33Updated this week
• SchubertLab / mvTCR
  ☆54Updated 11 months ago
• jlakkis / sciPENN
  ☆18Updated 3 years ago
• shanzha9 / siAgeModel
  ☆12Updated last year
• YDaiLab / scRegulate
  Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data
  ☆18Updated last month
• jasonHKU0907 / proteome-phenome-atlas
  ☆67Updated 7 months ago
• olapuentesantana / easier
  R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq
  ☆15Updated 10 months ago
• theislab / neural_organoid_atlas
  Reproducibility repository for the Human Neural Organoid Atlas publication
  ☆39Updated 10 months ago
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆18Updated last year
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆41Updated 2 months ago
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆25Updated 4 months ago