Maggi-Chen / FusionSeekerLinks
A gene fusion caller for long-read transcriptome sequencing data.
☆20Updated last year
Alternatives and similar repositories for FusionSeeker
Users that are interested in FusionSeeker are comparing it to the libraries listed below
Sorting:
- Error correction of ONT transcript reads☆58Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- ☆48Updated last year
- Copy number caller for long read data including SNV utilization☆67Updated 6 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- ☆78Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- ☆81Updated 7 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated last month
- ☆36Updated 2 months ago
- ☆45Updated 7 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- Variant annotation and merging pipeline☆39Updated 2 months ago
- ☆13Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated 10 months ago
- ☆32Updated last year
- Joint structural variant and copy number variant caller for HiFi sequencing data☆61Updated 2 weeks ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated last month
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆74Updated 2 weeks ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 2 months ago
- ☆30Updated 4 years ago