ClinGen / clincoded
This GCI/VCI 1.0 platform has now been retired, and replaced with our new 2.0 platform:
☆25Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for clincoded
- Kourami: Graph-guided assembly for HLA alleles☆35Updated 5 years ago
- create a gemini-compatible database from a VCF☆56Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆32Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 6 months ago
- Assembly Based ReAligner☆71Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆20Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- See the main fork of this repository here >>>☆38Updated last month
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 5 years ago
- ☆67Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- Fast fusion detection using kallisto☆80Updated 2 weeks ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- simple library for dealing with SAM cigar strings☆40Updated 3 years ago
- Analysis from kallisto paper☆32Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆79Updated last month
- Website to analyze conflicting assertions in ClinVar☆16Updated 8 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago