ClinGen / clincodedLinks
This GCI/VCI 1.0 platform has now been retired, and replaced with our new 2.0 platform:
☆25Updated 2 years ago
Alternatives and similar repositories for clincoded
Users that are interested in clincoded are comparing it to the libraries listed below
Sorting:
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Multi-sample somatic variant caller☆50Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 6 years ago
- Assembly Based ReAligner☆73Updated 7 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- This repository contains a list of tools or methods that have been used in GIAB analysis☆28Updated 5 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- ☆51Updated 5 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26Updated 2 years ago
- Kourami: Graph-guided assembly for HLA alleles☆38Updated 6 years ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆45Updated 2 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆24Updated 3 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- ☆23Updated 6 years ago