refresh-bio / VCFSharkLinks
☆18Updated 3 years ago
Alternatives and similar repositories for VCFShark
Users that are interested in VCFShark are comparing it to the libraries listed below
Sorting:
- ☆20Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆22Updated 2 years ago
- ☆28Updated 9 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ☆14Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- Population-wide Deletion Calling☆35Updated 9 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 7 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 8 months ago
- ☆16Updated last year
- ☆33Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 6 months ago
- GBWT-based handle graph☆31Updated this week