refresh-bio / VCFSharkLinks
☆18Updated 3 years ago
Alternatives and similar repositories for VCFShark
Users that are interested in VCFShark are comparing it to the libraries listed below
Sorting:
- Population-wide Deletion Calling☆35Updated last month
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- ☆28Updated last month
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆21Updated 3 years ago
- ☆14Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- ☆20Updated last year
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Sample Contamination Estimate from VCF☆19Updated 7 months ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆22Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 8 months ago
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Hitting associations with k-mers☆45Updated 3 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 weeks ago
- Find Unique genomic Regions☆29Updated 2 months ago