refresh-bio / VCFSharkLinks
☆18Updated 3 years ago
Alternatives and similar repositories for VCFShark
Users that are interested in VCFShark are comparing it to the libraries listed below
Sorting:
- ☆20Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- ☆16Updated 9 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated last month
- Structural variant (SV) analysis tools☆38Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated 3 weeks ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 weeks ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated last month
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago
- Evaluation of phasing performance☆23Updated 7 years ago
- A tool for simulating random mutations in any genome☆42Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Master of Pores 2☆23Updated 10 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Find Unique genomic Regions☆30Updated this week