a complete reference book for clusterProfiler and its sub-packages
☆16Aug 12, 2021Updated 4 years ago
Alternatives and similar repositories for clusterProfiler-book
Users that are interested in clusterProfiler-book are comparing it to the libraries listed below
Sorting:
- dplyr verbs for clusterProfiler outputs☆13Mar 12, 2020Updated 6 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆14Jul 3, 2012Updated 13 years ago
- Multi-Enrichment Analysis of Gene Set Enrichment Analysis Results☆26Feb 25, 2026Updated 3 weeks ago
- ChromSCape☆14Jul 30, 2025Updated 7 months ago
- Shiu Lab code base for Machine Learning implemented in SciKit-Learn☆13Oct 5, 2021Updated 4 years ago
- UCE Bioinformatics Pipeline☆17Sep 29, 2025Updated 5 months ago
- HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data☆20Apr 25, 2017Updated 8 years ago
- ☆13Updated this week
- Adapters for trimming☆30Jan 30, 2019Updated 7 years ago
- Miscellaneous functions commonly used by 'YuLab-SMU'.☆38Feb 11, 2026Updated last month
- Biomedical knowledge mining using GOSemSim and clusterProfiler☆89Mar 8, 2026Updated 2 weeks ago
- ☆10Jul 15, 2016Updated 9 years ago
- ☆12Dec 5, 2018Updated 7 years ago
- ☆10Jun 15, 2017Updated 8 years ago
- ☆10Aug 22, 2018Updated 7 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- MeSH Enrichment and Semantic analyses☆12Dec 23, 2025Updated 3 months ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- ☆24Jun 13, 2022Updated 3 years ago
- Homepage for YuLab-SMU☆14Mar 6, 2026Updated 2 weeks ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Apr 22, 2022Updated 3 years ago
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated last year
- ☆17Dec 15, 2017Updated 8 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- Reactome Pathway Analysis☆45Dec 23, 2025Updated 3 months ago
- Gene Set Enrichment Analysis and Over Representation Analysis analysis using R☆21Jun 20, 2019Updated 6 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- ☆12Dec 15, 2020Updated 5 years ago
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆10Feb 27, 2020Updated 6 years ago
- Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome inter…☆13Jun 17, 2022Updated 3 years ago
- ChIP peak Annotation, Comparison and Visualization☆250Nov 4, 2025Updated 4 months ago
- ☆23Mar 2, 2019Updated 7 years ago
- download files in R using wget -c☆16Aug 20, 2025Updated 7 months ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆11Mar 20, 2025Updated last year
- ☆12Apr 16, 2021Updated 4 years ago
- Estimate PTM hotspots in protein sequence alignments☆15Feb 6, 2019Updated 7 years ago