This repository contains course materials from JAX-BD2K workshop.
☆33May 14, 2019Updated 7 years ago
Alternatives and similar repositories for JAXBD2K-ShortCourse
Users that are interested in JAXBD2K-ShortCourse are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data☆20Apr 25, 2017Updated 9 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆13Jan 21, 2021Updated 5 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆18Feb 11, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Bioinformatics analysis scripts, workflows, general code examples☆57Feb 19, 2021Updated 5 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- bioGUI provides install modules for bioinformatic software for users and allows developers to script a GUI for their applications.☆21Oct 3, 2024Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated 5 months ago
- Lollipop-diagram to visualize genomic mutations☆20Sep 3, 2019Updated 6 years ago
- Base for the Viral Genomics and Bioinformatics Repository☆17Jul 5, 2024Updated 2 years ago
- Website for the precision medicine workshop☆49May 8, 2026Updated 2 months ago
- Repository for the Anczukow-Lab splicing pipeline☆17Mar 17, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 5 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- ☆19Nov 7, 2025Updated 8 months ago
- ☆12Mar 14, 2024Updated 2 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Sep 27, 2021Updated 4 years ago
- PTa Analysis TOolkit☆18Jun 9, 2026Updated last month
- Website for Computational Exome and Genome Analysis☆21Jul 30, 2019Updated 6 years ago
- Comprehensive benchmark of structural variant callers☆49Feb 4, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Mar 10, 2021Updated 5 years ago
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- This GCI/VCI 1.0 platform has now been retired, and replaced with our new 2.0 platform:☆26Sep 16, 2022Updated 3 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 6 years ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 6 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆46Apr 24, 2024Updated 2 years ago
- Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…☆26Nov 14, 2022Updated 3 years ago
- Tutorial on building a computing cluster for bioinformatics☆89Nov 28, 2023Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆45Jul 6, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Self-guided educational workshop for ChIP-Seq and RNA-Seq☆15Sep 15, 2020Updated 5 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- do some exercise☆15Dec 2, 2025Updated 7 months ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 7 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆29Mar 9, 2023Updated 3 years ago
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 3 years ago