TheJacksonLaboratory / JAXBD2K-ShortCourseLinks
This repository contains course materials from JAX-BD2K workshop.
☆32Updated 6 years ago
Alternatives and similar repositories for JAXBD2K-ShortCourse
Users that are interested in JAXBD2K-ShortCourse are comparing it to the libraries listed below
Sorting:
- Website for the precision medicine workshop☆45Updated last week
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Genomic data interpretation and visualization Workshop☆20Updated last week
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated 2 weeks ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- documentation for trackViewer☆29Updated 5 years ago
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆16Updated 4 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- a set of NGS pipelines☆24Updated last week
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆31Updated 2 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Comprehensive analysis of small RNA sequencing data☆31Updated 3 weeks ago
- ☆33Updated 3 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Updated 3 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago