TheJacksonLaboratory / JAXBD2K-ShortCourse
This repository contains course materials from JAX-BD2K workshop.
☆31Updated 5 years ago
Alternatives and similar repositories for JAXBD2K-ShortCourse:
Users that are interested in JAXBD2K-ShortCourse are comparing it to the libraries listed below
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated 2 weeks ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- ☆29Updated 5 years ago
- Website for the precision medicine workshop☆44Updated 2 months ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- documentation for trackViewer☆29Updated 5 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆21Updated 4 years ago
- DriverPower☆26Updated this week
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆40Updated 3 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated last year
- GTEx analysis scripts☆20Updated 7 years ago
- Summer school course materials collection☆25Updated 6 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 3 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆33Updated 3 years ago
- Workshop • Analysis of RNA-seq data☆34Updated 10 months ago
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆21Updated 3 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago