TheJacksonLaboratory / JAXBD2K-ShortCourseLinks
This repository contains course materials from JAX-BD2K workshop.
☆32Updated 6 years ago
Alternatives and similar repositories for JAXBD2K-ShortCourse
Users that are interested in JAXBD2K-ShortCourse are comparing it to the libraries listed below
Sorting:
- Website for the precision medicine workshop☆45Updated 2 weeks ago
- Genomic data interpretation and visualization Workshop☆21Updated 2 weeks ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- A continually expanding collection of RNA-seq tools☆52Updated this week
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- ☆33Updated 3 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Updated last year
- ☆29Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 4 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- DriverPower☆26Updated 8 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- interactive plots for differential expression analysis☆34Updated 3 months ago
- ☆44Updated 6 years ago
- R package for bcbio RNA-seq analysis.☆62Updated last year
- documentation for trackViewer☆29Updated 6 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆48Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago