This repository contains course materials from JAX-BD2K workshop.
☆32May 14, 2019Updated 6 years ago
Alternatives and similar repositories for JAXBD2K-ShortCourse
Users that are interested in JAXBD2K-ShortCourse are comparing it to the libraries listed below
Sorting:
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆11Feb 20, 2020Updated 6 years ago
- HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data☆20Apr 25, 2017Updated 8 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Jan 21, 2021Updated 5 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆17Feb 11, 2025Updated last year
- Bioinformatics analysis scripts, workflows, general code examples☆55Feb 19, 2021Updated 5 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 6 years ago
- bioGUI provides install modules for bioinformatic software for users and allows developers to script a GUI for their applications.☆21Oct 3, 2024Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated last month
- Lollipop-diagram to visualize genomic mutations☆20Sep 3, 2019Updated 6 years ago
- Base for the Viral Genomics and Bioinformatics Repository☆17Jul 5, 2024Updated last year
- Website for the precision medicine workshop☆47Feb 20, 2026Updated last month
- Repository for the Anczukow-Lab splicing pipeline☆17Mar 17, 2025Updated last year
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 4 years ago
- ☆18Nov 7, 2025Updated 4 months ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Sep 27, 2021Updated 4 years ago
- Website for Computational Exome and Genome Analysis☆20Jul 30, 2019Updated 6 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Dec 7, 2021Updated 4 years ago
- NiPTUNE. A Python library for NIPT analyses.☆12Nov 22, 2021Updated 4 years ago
- Comprehensive benchmark of structural variant callers☆48Feb 4, 2021Updated 5 years ago
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Mar 10, 2021Updated 5 years ago
- This GCI/VCI 1.0 platform has now been retired, and replaced with our new 2.0 platform:☆25Sep 16, 2022Updated 3 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆46Apr 24, 2024Updated last year
- Tutorial on building a computing cluster for bioinformatics☆88Nov 28, 2023Updated 2 years ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…☆26Nov 14, 2022Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Jul 6, 2020Updated 5 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 4 years ago
- Self-guided educational workshop for ChIP-Seq and RNA-Seq☆14Sep 15, 2020Updated 5 years ago
- do some exercise☆14Dec 2, 2025Updated 3 months ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆16Nov 14, 2022Updated 3 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆16Aug 9, 2018Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆29Mar 9, 2023Updated 3 years ago
- PTa Analysis TOolkit☆15Mar 2, 2026Updated 2 weeks ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 6 years ago