bahlolab / bioinfotools
Documenting usage and experience with bioinformatic tools
☆41Updated 9 years ago
Alternatives and similar repositories for bioinfotools:
Users that are interested in bioinfotools are comparing it to the libraries listed below
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- CNV screening and annotation tool☆24Updated 8 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- ☆78Updated 10 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 5 months ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 4 years ago
- CN-Learn☆29Updated 5 years ago
- identifying mutational significance in cancer genomes☆60Updated 2 years ago
- ☆52Updated 2 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- Tumor Mutational Burden☆57Updated 5 months ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆27Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 3 months ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- ☆45Updated 5 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- Burden testing against public controls☆50Updated 11 months ago
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 7 years ago
- ☆38Updated last year
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- ☆40Updated 2 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Reference data: BED files, genes, transcripts, variations.☆82Updated 7 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 6 years ago
- Tools for analyzing DNA methylation data☆36Updated this week