Documenting usage and experience with bioinformatic tools
☆40Sep 11, 2015Updated 11 years ago
Alternatives and similar repositories for bioinfotools
Users that are interested in bioinfotools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 11 months ago
- EBI cancer workshop course materials☆21May 9, 2022Updated 4 years ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 5 years ago
- These scripts reformat a VCF into a SQLite database, with R☆15Jul 15, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10May 17, 2017Updated 9 years ago
- A tool set for short variant discovery in genetic sequence data.☆207May 4, 2021Updated 5 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆83Jun 30, 2025Updated last year
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆90Updated this week
- HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data☆20Apr 25, 2017Updated 9 years ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Apr 20, 2026Updated 6 months ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 3 years ago
- data repo for fusions found in human genomes and transcriptomes☆10Jan 21, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆207Aug 23, 2026Updated 2 months ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- hands-on for NGS/SNParray CNV call trainning☆19Jun 13, 2022Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆39Nov 27, 2024Updated last year
- Somatic variant identification from unpaired samples☆15Jan 31, 2017Updated 9 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 9 years ago
- A normalization and copy number variation calling procedure for whole exome DNA sequencing data.☆10Sep 29, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Haplotype VCF comparison tools☆475Dec 7, 2023Updated 2 years ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 6 months ago
- Personal Cancer Genome Reporter (PCGR)☆284Updated this week
- Nextflow basic tutorial for newbie users☆34Jun 17, 2018Updated 8 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Oct 21, 2026Updated 2 weeks ago
- ☆15Jun 13, 2022Updated 4 years ago
- RNAseq pipeline for alternative splicing junctions☆15Mar 26, 2026Updated 7 months ago
- Lollipop-diagram to interactively visualize genetic mutations☆33Sep 10, 2024Updated 2 years ago
- A side-project from the AIP, containing the code, logic, and documentation for the ClinVar consequence reassessment process in use at the…☆12Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The Platinum Genomes Truthset☆90Nov 8, 2017Updated 8 years ago
- A tool kit to manage many variant on desktop computer☆13Updated this week
- HGVS variant name parsing and generation☆177Jun 14, 2023Updated 3 years ago
- Phenome Exome Association and Correlation Of Key phenotypes☆36Aug 19, 2021Updated 5 years ago
- BAM Statistics, Feature Counting and Annotation☆157Updated this week
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Bioinformatics Workflows☆19Nov 26, 2020Updated 5 years ago