WGLab / PennCNVLinks
Copy number vaiation detection from SNP arrays
☆94Updated last year
Alternatives and similar repositories for PennCNV
Users that are interested in PennCNV are comparing it to the libraries listed below
Sorting:
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 9 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆54Updated 4 years ago
- Tumor Mutational Burden☆62Updated last week
- Characterization of Germline variants☆98Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Reference data: BED files, genes, transcripts, variations.☆83Updated 7 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- Software program for checking sample matching for NGS data☆134Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆137Updated 3 months ago
- ☆89Updated 4 years ago
- WisecondorX — An evolved WISECONDOR☆101Updated last month
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- ☆116Updated last year
- Burden testing against public controls☆50Updated last year
- MOsaic CHromosomal Alterations (MoChA) caller☆86Updated 6 months ago
- Somatic copy variant caller (CNV) for next generation sequencing☆73Updated 10 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- ☆82Updated 6 years ago
- ☆21Updated 2 weeks ago