WGLab / PennCNV
Copy number vaiation detection from SNP arrays
☆91Updated 10 months ago
Alternatives and similar repositories for PennCNV:
Users that are interested in PennCNV are comparing it to the libraries listed below
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- Reference data: BED files, genes, transcripts, variations.☆82Updated 7 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- WisecondorX — An evolved WISECONDOR☆96Updated 6 months ago
- Copy number calling and variant classification using targeted short read sequencing☆132Updated this week
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆92Updated 7 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- Burden testing against public controls☆50Updated last year
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 3 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆78Updated 3 months ago
- Segmented HAPlotype Estimation and Imputation Tool☆76Updated 7 months ago
- Documentation and description of AWS iGenomes S3 resource.☆111Updated 3 months ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 10 months ago
- ☆112Updated last year
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- Phenotype driven gene prioritization for HPO☆45Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆61Updated last year
- ☆53Updated 2 years ago
- RNASeq pipeline☆36Updated 5 years ago
- A small-RNA sequencing analysis pipeline☆80Updated 3 weeks ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- ☆82Updated 6 years ago