The-Sequence-Ontology / GAL
Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations
☆17Updated last year
Related projects ⓘ
Alternatives and complementary repositories for GAL
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆59Updated 8 months ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Master of Pores 2☆23Updated last year
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆38Updated 2 years ago
- Structural Variant Prediction Viewer☆31Updated 7 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Materials for Spring 2021 Applied Genomics Course☆52Updated 3 years ago
- Structural variant caller☆54Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆28Updated last month
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago