The-Sequence-Ontology / GAL
Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations
☆17Updated 2 years ago
Alternatives and similar repositories for GAL:
Users that are interested in GAL are comparing it to the libraries listed below
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- PERF is an Exhaustive Repeat Finder☆32Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- Structural Variant Index☆70Updated last month
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Maximum likelihood demultiplexing☆46Updated last year
- ☆23Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Materials for Spring 2021 Applied Genomics Course☆52Updated 3 years ago
- ☆79Updated 8 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆72Updated 7 months ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago