The-Sequence-Ontology / GALView external linksLinks
Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations
☆17Feb 5, 2025Updated last year
Alternatives and similar repositories for GAL
Users that are interested in GAL are comparing it to the libraries listed below
Sorting:
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 4 years ago
- Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI☆24Sep 3, 2014Updated 11 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆66Jul 31, 2025Updated 6 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Dec 4, 2018Updated 7 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- The BioPerl Web site: http://bioperl.org☆14Aug 29, 2019Updated 6 years ago
- cgat-apps repository☆34Apr 9, 2025Updated 10 months ago
- Collect of SO Ontologies☆102Sep 10, 2025Updated 5 months ago
- MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapp…☆18Feb 18, 2022Updated 3 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Sep 7, 2018Updated 7 years ago
- A tutorial for learning de novo assembly☆33Dec 8, 2011Updated 14 years ago
- The MARVEL assembler☆79Jul 7, 2023Updated 2 years ago
- fastq quality assessment and filtering tool☆18Dec 10, 2022Updated 3 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- Creates Venn diagrams for OrthoMCL output☆17Aug 9, 2017Updated 8 years ago
- collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)☆23Mar 29, 2021Updated 4 years ago
- CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer☆20Jan 21, 2019Updated 7 years ago
- C++ package for analysing CRISPR off targets☆21Apr 26, 2021Updated 4 years ago
- OBF Google Summer of Code☆21Jan 21, 2025Updated last year
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆32Mar 8, 2025Updated 11 months ago
- ☆108Dec 3, 2025Updated 2 months ago
- Python programs for processing GFF3 files☆102Dec 15, 2025Updated 2 months ago
- CRISPR/Cas9 guide RNA Design☆24Feb 20, 2024Updated last year
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆25Feb 22, 2019Updated 6 years ago
- ☆28Apr 9, 2025Updated 10 months ago
- Tools for next-generation sequencing analysis☆89Jun 25, 2019Updated 6 years ago
- ☆33Jul 9, 2024Updated last year
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆26Jun 20, 2022Updated 3 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 3 years ago
- shifts hg19/38 genomic position for feasible input format.☆12Jun 8, 2023Updated 2 years ago
- MView extracts and reformats the results of a sequence database search or multiple alignment.☆33Sep 8, 2024Updated last year
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- Debpic lets you easily build Debian packages in an isolated Docker environment.☆11Dec 6, 2024Updated last year
- ☆38Apr 8, 2022Updated 3 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Ultra-fast de novo assembler using long noisy reads☆136Feb 24, 2021Updated 4 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago