Nextflow implementation of scAutoQC pipeline
☆12Sep 30, 2026Updated last week
Alternatives and similar repositories for nf-scautoqc
Users that are interested in nf-scautoqc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cell type specific, trait-associated gene regulation☆31Sep 8, 2026Updated last month
- ☆10Jul 17, 2023Updated 3 years ago
- Functional and Learnable Cell dynamicS☆22May 13, 2025Updated last year
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆49Jan 28, 2026Updated 8 months ago
- Vignettes for Cardinal3 paper☆11Feb 20, 2023Updated 3 years ago
- Gene group activity utility functions for Scanpy☆118Dec 21, 2024Updated last year
- Analysis of sequencing error profile for long read data.☆13Mar 30, 2023Updated 3 years ago
- Nextflow version of Sopa - spatial omics pipeline and analysis☆21Updated this week
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- ☆33Jul 27, 2026Updated 2 months ago
- Read and write TIFF images in R☆11Aug 24, 2026Updated last month
- ☆24Apr 30, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- Unix table column and row manipulation using column names☆12Oct 1, 2026Updated last week
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- ☆16Apr 18, 2025Updated last year
- End-guided RNA assembler☆15Dec 2, 2025Updated 10 months ago
- code and files for SPARC curation workflows☆18Aug 26, 2026Updated last month
- A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers☆12Jan 30, 2023Updated 3 years ago
- pseudobulking on an AnnData object☆37Jun 17, 2026Updated 3 months ago
- Unix terminal histograms, sequencing depth and bar charts (hissyfit). Small data/file munge, morph, find and count scripts/functions in v…☆22Oct 1, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Integration of gut cell atlases☆41May 6, 2026Updated 5 months ago
- Find and decompose genomic variation sites in pangenome graphs☆17Aug 17, 2026Updated last month
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- An AnnData-based framework for integrated proteomics analysis☆30Sep 28, 2026Updated last week
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated 2 years ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆61Aug 21, 2023Updated 3 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- 使用表达数据,对候选基因进行特征选择,然后构建诊断/预后模型,并使用SHAP分析特征的贡献策划的怒☆17Oct 16, 2025Updated 11 months ago
- A repository for the Petagraph project☆16Dec 11, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Sep 20, 2026Updated 2 weeks ago
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated 2 years ago
- ☆47Nov 26, 2025Updated 10 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆42Jun 7, 2026Updated 4 months ago
- TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Tempora…☆19May 20, 2025Updated last year
- polyApipe☆25Feb 10, 2025Updated last year