Nextflow implementation of scAutoQC pipeline
☆12Jul 9, 2026Updated last week
Alternatives and similar repositories for nf-scautoqc
Users that are interested in nf-scautoqc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cell type specific, trait-associated gene regulation☆30Mar 31, 2025Updated last year
- ☆10Jul 17, 2023Updated 3 years ago
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated last year
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆49Jan 28, 2026Updated 5 months ago
- Vignettes for Cardinal3 paper☆10Feb 20, 2023Updated 3 years ago
- Analysis of sequencing error profile for long read data.☆13Mar 30, 2023Updated 3 years ago
- Nextflow version of Sopa - spatial omics pipeline and analysis☆18Updated this week
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Read and write TIFF images in R☆10Nov 27, 2023Updated 2 years ago
- ☆28Updated this week
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Unix table column and row manipulation using column names☆12Jun 17, 2026Updated last month
- TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Tempora…☆17May 20, 2025Updated last year
- ☆16Apr 18, 2025Updated last year
- End-guided RNA assembler☆15Dec 2, 2025Updated 7 months ago
- A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers☆12Jan 30, 2023Updated 3 years ago
- code and files for SPARC curation workflows☆18May 23, 2026Updated last month
- pseudobulking on an AnnData object☆37Jun 17, 2026Updated last month
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆16Mar 23, 2024Updated 2 years ago
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- Find and decompose genomic variation sites in pangenome graphs☆16Updated this week
- Integration of gut cell atlases☆39May 6, 2026Updated 2 months ago
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated 2 years ago
- Unix terminal histograms, sequencing depth and bar charts (hissyfit). Small data/file munge, morph, find and count scripts/functions in v…☆22Jun 30, 2026Updated 3 weeks ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆60Aug 21, 2023Updated 2 years ago
- 使用表达数据，对候选基因进行特征选择，然后构建诊断/预后模型，并使用SHAP分析特征的贡献策划的怒☆17Oct 16, 2025Updated 9 months ago
- An AnnData-based framework for integrated proteomics analysis☆28Jul 8, 2026Updated last week
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A repository for the Petagraph project☆16Dec 11, 2025Updated 7 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 5 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Mar 28, 2026Updated 3 months ago
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated 2 years ago
- CellRank 2's reproducibility repository.☆15Sep 4, 2024Updated last year
- polyApipe☆22Feb 10, 2025Updated last year
- ☆43Nov 26, 2025Updated 7 months ago