immunogenomics / amp_phase1_ra
Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
☆21Updated 3 years ago
Related projects: ⓘ
- ConsensusTME Gene Sets and R Script☆38Updated 3 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- R package for specialised analysis of single cell data☆35Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆54Updated 6 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- scWGCNA☆53Updated last year
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 2 years ago
- ☆45Updated 7 months ago
- ☆36Updated 3 years ago
- ☆38Updated 2 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆25Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆36Updated 2 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆32Updated last year
- ☆28Updated 6 months ago
- ☆25Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆40Updated 7 months ago
- ☆29Updated last year
- Single Cell Epigenome-based Inference of Activity☆19Updated 11 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆26Updated 4 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆26Updated 3 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated last year
- Functional Inference of Gene Regulation☆33Updated 2 months ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆46Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆21Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆42Updated 5 months ago
- ☆53Updated 3 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆64Updated 3 weeks ago