immunogenomics / amp_phase1_ra
Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
☆19Updated 4 years ago
Alternatives and similar repositories for amp_phase1_ra:
Users that are interested in amp_phase1_ra are comparing it to the libraries listed below
- ConsensusTME Gene Sets and R Script☆39Updated 8 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- ☆46Updated last month
- Individual level Differential Expression Analysis for Single cells☆23Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https:// …☆42Updated 4 years ago
- ☆60Updated 4 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 3 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆23Updated 6 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 3 years ago
- scWGCNA☆56Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- ☆38Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆29Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- ☆33Updated 5 years ago
- ☆47Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- ☆29Updated 6 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated 11 months ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆27Updated 4 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆21Updated 6 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆51Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆35Updated last year