Pipeline for processing of GoT-ChA genotyping data and downstream analysis
☆15Mar 17, 2025Updated last year
Alternatives and similar repositories for Gotcha
Users that are interested in Gotcha are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 3 years ago
- Code for the Framepool model☆15Feb 1, 2025Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆22May 17, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Toolkit for single-cell copy number analysis☆35Dec 15, 2025Updated 5 months ago
- R package CoxBoost☆10Dec 11, 2025Updated 5 months ago
- Perturb-seq analysis package☆16May 2, 2024Updated 2 years ago
- ☆13Dec 19, 2022Updated 3 years ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆14May 8, 2020Updated 6 years ago
- ☆24Oct 15, 2018Updated 7 years ago
- ☆17Mar 12, 2021Updated 5 years ago
- ☆21Jul 16, 2024Updated last year
- ☆19Aug 29, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Linux CPU temperature terminal monitor with history charts.☆13Nov 20, 2015Updated 10 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Apr 7, 2016Updated 10 years ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆21Aug 29, 2022Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 3 years ago
- Python syntax highlighting script for Vim☆13Jan 3, 2018Updated 8 years ago
- clusterBMA: Bayesian Model Averaging for Clustering☆13Feb 5, 2024Updated 2 years ago
- Adaptive Width KDE with Gaussian Kernels☆45Jan 19, 2024Updated 2 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70May 7, 2026Updated 2 weeks ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 10 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DNA copy number detection from off-target sequence data☆34May 17, 2018Updated 8 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- ☆13Sep 18, 2017Updated 8 years ago
- ☆40Oct 25, 2018Updated 7 years ago
- Repo containing information and datasets for on-going tidybiology trainings and meetups☆15Nov 30, 2020Updated 5 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Mar 27, 2026Updated last month
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated 11 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆10Nov 11, 2025Updated 6 months ago
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆20Jan 8, 2026Updated 4 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆25May 17, 2026Updated last week
- A Demultiplexing Tool for Illumina Sequencers☆10Sep 27, 2016Updated 9 years ago
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 4 years ago