landau-lab / GotchaLinks
Pipeline for processing of GoT-ChA genotyping data and downstream analysis
☆14Updated 6 months ago
Alternatives and similar repositories for Gotcha
Users that are interested in Gotcha are comparing it to the libraries listed below
Sorting:
- ☆12Updated 4 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- Advanced steps of the OSCA book☆13Updated 5 months ago
- ☆20Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ChromSCape☆14Updated last month
- Pipeline for Universal Mapping of ATAC-seq☆25Updated this week
- ☆17Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 5 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- A collection of perl scripts for NGS analysis☆16Updated 11 months ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 8 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- ☆18Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- Vaeda method for computational doublet annotation☆17Updated last year
- ☆25Updated 3 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆17Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- TF analysis from epigenetic and Hi-C data☆18Updated 5 months ago
- splicing and feature maps for RBPs☆25Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- ☆18Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago