landau-lab / GotchaView external linksLinks
Pipeline for processing of GoT-ChA genotyping data and downstream analysis
☆15Mar 17, 2025Updated 10 months ago
Alternatives and similar repositories for Gotcha
Users that are interested in Gotcha are comparing it to the libraries listed below
Sorting:
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 6 years ago
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 3 years ago
- ☆19Aug 29, 2025Updated 5 months ago
- ☆20Jul 16, 2024Updated last year
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Aug 29, 2022Updated 3 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Jan 27, 2026Updated 2 weeks ago
- Toolkit for single-cell copy number analysis☆29Dec 15, 2025Updated last month
- ☆24Oct 15, 2018Updated 7 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated this week
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- ☆20May 6, 2025Updated 9 months ago
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated 8 months ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated last month
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 3 years ago
- ☆10Feb 2, 2026Updated last week
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- ☆10May 31, 2022Updated 3 years ago
- Toolkit for single-cell DNA methylation analysis.☆46Jan 19, 2026Updated 3 weeks ago
- Single cell RNA-seq analysis bundle☆37Sep 13, 2019Updated 6 years ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 9 years ago
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆10Mar 11, 2024Updated last year
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆10Jan 23, 2026Updated 3 weeks ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 3 years ago
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 7 months ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions☆13Aug 2, 2022Updated 3 years ago
- Explore the Hi-Cs☆11Nov 30, 2025Updated 2 months ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- ☆12Aug 23, 2023Updated 2 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆13Mar 10, 2023Updated 2 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- Code used in article "Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation".☆12Mar 21, 2023Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago