crazyhottommy / Machine_learning_drug_discovery

Related projects ⓘ

Alternatives and complementary repositories for Machine_learning_drug_discovery

• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆36Updated 8 months ago
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆14Updated 2 weeks ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆12Updated 3 years ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆23Updated 2 years ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆15Updated 2 months ago
• pmoris / ImRex
  Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes
  ☆15Updated last year
• epigen / KPNN
  Knowledge-primed neural networks
  ☆34Updated last year
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆13Updated 2 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆33Updated 2 years ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆23Updated 8 months ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆17Updated 6 months ago
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆22Updated 3 years ago
• TRON-Bioinformatics / neofox
  Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
  ☆27Updated 3 months ago
• KarchinLab / HotMAPS_2016
  Detects hotspot regions for somatic mutations in 3D protein structures
  ☆2Updated 8 months ago
• singha53-zz / diablo
  DIABLO - an integrative multi-group, multi-dataset classification method
  ☆21Updated 5 years ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆18Updated last year
• NKI-AI / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆25Updated 6 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆39Updated 2 months ago
• bhklab / PGx_Guidelines
  ☆10Updated 3 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆25Updated last year
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆24Updated last year
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆25Updated 3 weeks ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆20Updated 3 months ago
• GreiffLab / immuneSIM
  ☆38Updated 11 months ago
• MannLabs / proteomesoflife
  python based queries for the proteomesoflife neo4j network database
  ☆13Updated 4 years ago
• statbiophys / HLAGuessr
  ☆16Updated last month
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆15Updated 2 months ago
• ncborcherding / Ibex
  Using BCR and expression for sequence embedding
  ☆19Updated 3 weeks ago
• IEDB / TCRMatch
  ☆26Updated last week