Alternatives and similar repositories for Machine_learning_drug_discovery

Users that are interested in Machine_learning_drug_discovery are comparing it to the libraries listed below

• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆48Updated last year
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆26Updated 3 years ago
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆24Updated 4 years ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆24Updated 5 months ago
• getzlab / CLUMPS-PTM
  CLUMPS adapted to post-translational modifications.
  ☆10Updated 7 months ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆16Updated 3 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆35Updated 3 years ago
• IEDB / TCRMatch
  ☆31Updated 6 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• singha53-zz / diablo
  DIABLO - an integrative multi-group, multi-dataset classification method
  ☆26Updated 6 years ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆16Updated 4 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 11 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆46Updated 2 years ago
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆25Updated 3 months ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆69Updated last month
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆22Updated 4 months ago
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆19Updated last year
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆37Updated 5 years ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆24Updated last month
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆49Updated 4 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆73Updated last week
• emmijokinen / TCRGP
  TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…
  ☆30Updated 2 years ago
• albert-ying / MethylGPT
  This is the official codebase for methylGPT : a foundation model for the DNA methylome.
  ☆50Updated 5 months ago
• GfellerLab / MixTCRpred
  Predictor of TCR-epitope interactions
  ☆34Updated 4 months ago
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆22Updated 2 years ago
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆24Updated 3 months ago
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆15Updated last week
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆27Updated last year