Alternatives and similar repositories for human

Users that are interested in human are comparing it to the libraries listed below

• rajewsky-lab / spacemake
  ☆44Updated this week
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆52Updated 9 months ago
• Teichlab / sctk
  ☆38Updated 8 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆79Updated this week
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆22Updated this week
• lcmmichielsen / scHPL
  ☆35Updated 2 months ago
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆24Updated 2 years ago
• ajaynadig / TRADEtools
  ☆23Updated 2 months ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆25Updated 11 months ago
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆33Updated 2 weeks ago
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆45Updated last year
• PoolLab / generecovery
  ☆29Updated 2 years ago
• hukai916 / scATACpipe
  ☆27Updated 7 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆43Updated 2 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆22Updated 3 years ago
• cellatlas / cellatlas
  ☆16Updated 10 months ago
• neurorestore / DE-analysis
  ☆39Updated 3 years ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆56Updated last year
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆24Updated 2 weeks ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆30Updated last month
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated last year
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated 3 months ago
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆59Updated 3 years ago
• aertslab / scenicplus_analyses
  SCENIC+ analyses
  ☆14Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆42Updated last year
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated 3 weeks ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated 2 years ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆54Updated 3 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆25Updated 4 months ago