Fast, accurate and scalable normalization for RNA sequencing data with the RUVprps software package.
☆14Feb 23, 2026Updated 2 months ago
Alternatives and similar repositories for RUVprps
Users that are interested in RUVprps are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake with pytest example☆11Jul 18, 2020Updated 5 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) wi…☆14Feb 11, 2021Updated 5 years ago
- Inference of TCR motifs☆32Jun 17, 2025Updated 10 months ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆16Oct 10, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tool for IDentification and Enumeration of Spliced and Unspliced Read Fragments☆16Dec 23, 2025Updated 4 months ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Jun 13, 2024Updated last year
- ☆28Jan 31, 2026Updated 3 months ago
- A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data☆10Oct 1, 2024Updated last year
- ☆19Jun 5, 2024Updated last year
- ggplot to loon☆28Jun 12, 2025Updated 10 months ago
- ☆28Nov 21, 2019Updated 6 years ago
- Demonstration of the use of an R package to organize a data analysis project☆23Mar 30, 2020Updated 6 years ago
- Time-resolved single-cell transcriptomics (Zman-seq)☆12Apr 9, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Bayesian network modelling of mutational interactions identifies novel cancer subgroups☆15May 10, 2021Updated 4 years ago
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Aug 10, 2022Updated 3 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- A phenotyping pipeline for Python☆13Oct 20, 2025Updated 6 months ago
- step by step tutorial in the website☆33Feb 22, 2025Updated last year
- Make coverage plots from bam files!☆15Mar 17, 2026Updated last month
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆14Jun 21, 2023Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Nov 3, 2022Updated 3 years ago
- Somatic workflow for Kids-First☆15Apr 16, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 4 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆40Mar 21, 2026Updated last month
- Command line tool to plot genomic coverage from a BAM file☆14Apr 5, 2023Updated 3 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆40Apr 7, 2026Updated 3 weeks ago
- Provides classes for working with sets☆11Dec 19, 2025Updated 4 months ago
- An analysis pipeline for Nanostring nCounter expression data.☆18Jan 30, 2026Updated 2 months ago
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 5 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆40Mar 31, 2026Updated 3 weeks ago
- port4me - Get the Same, Personal, Free TCP Port over and over☆13Mar 1, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A collection of materials used in Undergraduate Bioinformatics Club (UBIC) workshops at UCSD.☆50Feb 19, 2026Updated 2 months ago
- ☆48Apr 18, 2020Updated 6 years ago
- ☆52Feb 19, 2026Updated 2 months ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Mar 19, 2026Updated last month
- Research Software Design by Example☆13Sep 7, 2025Updated 7 months ago
- Local context manager for Claude Code and Codex with workstreams, transcript binding, and branching.☆93Apr 21, 2026Updated last week
- Website and slides for intro to bioinformatics class at Fred Hutch☆13Jun 4, 2018Updated 7 years ago