mauriceling / advancesyntoolkitLinks
Toolkit for Modelling and Simulation of Gene Expressions and Metabolism
☆12Updated 2 weeks ago
Alternatives and similar repositories for advancesyntoolkit
Users that are interested in advancesyntoolkit are comparing it to the libraries listed below
Sorting:
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 5 months ago
- Find common blocks and differences between DNA sequences☆42Updated 6 months ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 6 months ago
- Read DNA sequences from colourful Microsoft Word documents☆34Updated 5 months ago
- Predict DNA assembly clone validity rates - powered by Kappa☆10Updated 5 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 5 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated last week
- Codon usage tables in code-friendly format + Python bindings☆39Updated 5 months ago
- 💫 Computer-aided DNA assembly validation and identification from restriction digests.☆15Updated 5 months ago
- A route planner for DNA assembly☆36Updated 5 months ago
- Webserver and command line tool for annotating engineered plasmids☆133Updated 3 months ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆63Updated 8 months ago
- ReFramed: metabolic modeling package☆61Updated last month
- SBOL Designer Project☆32Updated 4 years ago
- Enzyme-constrained genome-scale models in python☆28Updated 2 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated 6 months ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- BGC Detection and Classification Using Deep Learning☆154Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆75Updated 3 months ago
- cameo - computer aided metabolic engineering & optimization☆120Updated 2 years ago
- A PCR primer tool for DNA assembly flows☆33Updated last year
- General low-level API☆50Updated 3 years ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆41Updated last week
- A genome diagram generator for microbes and organelles☆31Updated this week
- ☆29Updated last year
- A multiple sequence alignment viewer☆24Updated last week
- The BiGG Models website server☆85Updated 5 years ago