mauriceling / advancesyntoolkitLinks
Toolkit for Modelling and Simulation of Gene Expressions and Metabolism
☆13Updated 2 months ago
Alternatives and similar repositories for advancesyntoolkit
Users that are interested in advancesyntoolkit are comparing it to the libraries listed below
Sorting:
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 4 months ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 4 months ago
- Find common blocks and differences between DNA sequences☆42Updated 6 months ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 6 months ago
- A route planner for DNA assembly☆36Updated 4 months ago
- Read DNA sequences from colourful Microsoft Word documents☆34Updated 4 months ago
- Codon usage tables in code-friendly format + Python bindings☆39Updated 5 months ago
- 💫 Computer-aided DNA assembly validation and identification from restriction digests.☆15Updated 4 months ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆41Updated 7 months ago
- Metabolic Engineering Workbench☆40Updated last year
- Predict DNA assembly clone validity rates - powered by Kappa☆10Updated 5 years ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- Webserver and command line tool for annotating engineered plasmids☆131Updated 2 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- SBOL Designer Project☆32Updated 4 years ago
- General low-level API☆50Updated 3 years ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆57Updated 9 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated last week
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated 6 months ago
- 🎺 Plot DNA digestion band patterns with Python☆20Updated 4 months ago
- Protein structure alignment and search algorithm☆73Updated this week
- Transmembrane proteins predicted through Language Model embeddings☆39Updated 2 months ago
- A PCR primer tool for DNA assembly flows☆33Updated last year
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆154Updated 10 months ago
- Short overhangs design for DNA assembly☆15Updated 3 years ago
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆75Updated 2 months ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆61Updated 5 years ago