EPFL-LCSB / skimpyLinks
Symbolic Kinetic Models with Python
☆32Updated 3 months ago
Alternatives and similar repositories for skimpy
Users that are interested in skimpy are comparing it to the libraries listed below
Sorting:
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- A python toolbox for 13C metabolic flux analysis☆23Updated 2 months ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆30Updated 2 years ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆41Updated 2 months ago
- ☆25Updated 2 years ago
- Release of the whole cell E. coli model.☆70Updated 9 months ago
- BRENDA parser in python☆22Updated 3 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated 3 weeks ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆29Updated 3 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated 3 weeks ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- Fast and accurate protein structure prediction☆54Updated 8 months ago
- Metabolic Engineering Workbench☆40Updated last year
- PSIPRED Protein Secondary Structure Predictor☆58Updated 2 months ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆40Updated 6 months ago
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biology☆58Updated last week
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 5 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- A modular compiler for biological chemical reaction networks☆47Updated last week
- Python Environment for Modeling and Simulating Biological Systems☆123Updated 2 months ago
- ☆10Updated last year
- Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical pro…☆33Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- JBEI Quantitative Metabolic Modeling library☆12Updated 5 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆59Updated 5 months ago