Alternatives and similar repositories for predictprotein-docker

Users that are interested in predictprotein-docker are comparing it to the libraries listed below

• oxpig / saab_plus
  ☆26Updated 5 years ago
• sokrypton / seqmodels
  ☆32Updated last week
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆26Updated 2 years ago
• walterlab-HMS / SPOC
  Code repository for the SPOC tool for scoring binary AF-M predicitons.
  ☆13Updated 4 months ago
• bouralab / Prop3D
  A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…
  ☆38Updated last year
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆16Updated 5 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆53Updated 9 months ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated 8 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆47Updated 3 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆29Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated 7 months ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• Doudna-lab / GARNET_DL
  ☆36Updated 7 months ago
• Llannelongue / B4PPI
  Benchmarking Pipeline for Prediction of Protein-Protein Interactions
  ☆13Updated 3 years ago
• refresh-bio / protestar
  Protein Structure Archiver
  ☆12Updated last year
• maslov-group / DR-BERT
  ☆24Updated 2 years ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆91Updated last year
• Faezov / PDBrenum
  ☆30Updated 3 months ago
• PDB-REDO / AlphaBridge
  ☆40Updated 2 weeks ago
• duolinwang / MusiteDeep_web
  This repository contains the stand-alone tool for MusiteDeep server
  ☆34Updated 4 years ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆31Updated last year
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 2 months ago
• Bitbol-Lab / Phylogeny-MSA-Transformer
  Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…
  ☆17Updated 7 months ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆51Updated 3 weeks ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆67Updated 2 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆58Updated 4 months ago
• JudeWells / chainsaw
  ☆43Updated 11 months ago