Alternatives and similar repositories for predictprotein-docker

Users that are interested in predictprotein-docker are comparing it to the libraries listed below

• PDB-REDO / AlphaBridge
  ☆48Updated last month
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆58Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• oxpig / saab_plus
  ☆26Updated 6 years ago
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆38Updated 4 months ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• Doudna-lab / GARNET_DL
  ☆36Updated 11 months ago
• walterlab-HMS / SPOC
  Code repository for the SPOC tool for scoring binary AF-M predicitons.
  ☆15Updated 8 months ago
• ProteinsWebTeam / interpro7-api
  ☆19Updated last month
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆34Updated 4 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆95Updated last month
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆34Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆61Updated 9 months ago
• liudan111 / PLM-interact
  PLM-interact: extending protein language models to predict protein-protein interactions.
  ☆54Updated 4 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆33Updated 2 years ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆56Updated 3 years ago
• SNU-CSSB / RF2-Lite
  ☆32Updated last year
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆56Updated 11 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• sokrypton / seqmodels
  ☆32Updated 3 months ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆31Updated last year
• Llannelongue / B4PPI
  Benchmarking Pipeline for Prediction of Protein-Protein Interactions
  ☆14Updated 3 years ago
• duolinwang / MusiteDeep_web
  This repository contains the stand-alone tool for MusiteDeep server
  ☆35Updated 5 years ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated 4 months ago
• jas-preet / SPOT-1D-Single
  The standalone version of SPOT-1D-Single available for public use for research purposes.
  ☆24Updated last year
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated 2 years ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆37Updated last week
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆27Updated 2 years ago