Rostlab / predictprotein-docker
Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository will result in a fully functioning predictprotein suite, including all of its required methods. Databases are not included.
☆13Updated last year
Alternatives and similar repositories for predictprotein-docker:
Users that are interested in predictprotein-docker are comparing it to the libraries listed below
- Graph Network for protein-protein interface including language model features☆28Updated 10 months ago
- Machine learning prediction of enzyme optimum pH☆29Updated last week
- Evolutionary conservation estimation of residues or nucleotides☆33Updated 2 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆50Updated 2 months ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆33Updated this week
- Fast and accurate protein structure prediction☆49Updated 2 weeks ago
- ☆66Updated 4 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆40Updated 3 weeks ago
- ☆30Updated 4 months ago
- Transmembrane proteins predicted through Language Model embeddings☆32Updated last week
- Feature map and function annotation of Proteins☆30Updated 7 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆27Updated last year
- RNA Multiple Sequence Alignment☆30Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆79Updated 10 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆31Updated 3 months ago
- DeepECtransformer☆23Updated last year
- ☆16Updated last month
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆30Updated last week
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated last year
- ☆29Updated last year
- Predict the structure of immune receptor proteins☆48Updated 2 months ago
- Evolutionary velocity with protein language models☆84Updated last year
- A domain parser for Alphafold models☆32Updated last year
- ☆19Updated last year
- ☆25Updated 7 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated last month
- Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic app…☆18Updated 5 months ago
- Tools for annotation, processing and ML for antibody sequences☆25Updated 3 weeks ago
- Detection of remote homology by comparison of protein language model representations☆47Updated last month