artedison / Edison_Lab_Shared_Metabolomics_UGA
Official Edison Lab toolboxes and scripts for analyzing metabolomics data.
☆13Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Edison_Lab_Shared_Metabolomics_UGA
- Course "Machine learning" in Bioinformatics Institute☆14Updated 7 months ago
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Updated last year
- Best-matched internal standard normalization for metabolomics☆8Updated 6 years ago
- ☆13Updated last month
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆11Updated 11 months ago
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆17Updated last month
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 3 months ago
- Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México☆20Updated this week
- ☆12Updated 2 weeks ago
- Graphical user interface for de novo sequencing of tandem mass spectra☆14Updated 8 months ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆10Updated this week
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆13Updated last year
- A package to cluster and visualise MS/MS spectral data☆11Updated 3 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆26Updated last year
- CarveMe: genome-scale metabolic model reconstruction☆159Updated 2 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆23Updated 5 months ago
- Repo for student website☆24Updated last week
- Python package to study microbial communities using metabolic modeling.☆94Updated this week
- MAss spectra alignment tool for MSI data☆18Updated 2 years ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆26Updated last year
- Category-wide association study (CWAS) (Werling et al., 2018; An et al., 2018)☆10Updated 4 months ago
- Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads☆9Updated 9 months ago
- A brief, quick and dirty introduction to Sequence Similarity Networks☆19Updated last year
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆78Updated last month
- Pipeline for metabolic annotation of microbial genomes☆140Updated 4 months ago
- geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics☆10Updated 3 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆31Updated 6 months ago
- Discovery of conserved gene clusters in multiple genomes☆56Updated 2 weeks ago
- antiSMASH☆189Updated this week
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆75Updated this week