The code and distributable for designing minimal microbial communities with specified metabolic functions.
☆11Aug 9, 2017Updated 8 years ago
Alternatives and similar repositories for CoMiDA
Users that are interested in CoMiDA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆70May 6, 2025Updated last year
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆46Jul 9, 2025Updated 11 months ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Mar 4, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆69Jun 4, 2026Updated last week
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated this week
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated last month
- R/Shiny application for viewing microbial community data☆19Dec 17, 2020Updated 5 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆91Updated this week
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- Package to standardize country names and set Correlate of War IDs☆12Mar 7, 2023Updated 3 years ago
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Finnish Meteorological Institute open data API R client☆10Sep 9, 2019Updated 6 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 26, 2026Updated 3 weeks ago
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 3 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jan 26, 2025Updated last year
- ☆25Feb 21, 2017Updated 9 years ago
- ☆10Jul 4, 2019Updated 6 years ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- Bunch of helper files for the Slurm resource manager☆15Apr 21, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆16Nov 19, 2025Updated 6 months ago
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 3 years ago
- IPHOMED☆12Mar 30, 2026Updated 2 months ago
- Development guidlines for software within NBIS.☆18Jul 1, 2025Updated 11 months ago
- A conda-smithy repository for vtk.☆16May 29, 2026Updated 2 weeks ago
- agent based modelling☆37Aug 28, 2024Updated last year
- ☆12Dec 10, 2024Updated last year
- Toolchest Python client☆15Sep 6, 2023Updated 2 years ago
- Provides easy access to Thermo Discoverer platform results☆20Apr 22, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bash script to download all lecture videos & notes for a particular course on Coursera.org.☆13Dec 25, 2015Updated 10 years ago
- Compute sunrise and sunset times from geographical location, and reverse function☆11Sep 14, 2022Updated 3 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 6 years ago
- Dockerized Version of the DiffDock model from MIT☆13May 22, 2023Updated 3 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 6 years ago
- an initiative to provide infrastructure for reproducible workflows around open data☆29Jun 1, 2022Updated 4 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆128Updated this week