An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics
☆15Sep 23, 2025Updated 9 months ago
Alternatives and similar repositories for pyCellPhenoX
Users that are interested in pyCellPhenoX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated 5 months ago
- ☆43Nov 26, 2025Updated 7 months ago
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆39May 31, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- EXpression PREdiction with Summary Statistics Only☆14Dec 10, 2025Updated 7 months ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Apr 16, 2019Updated 7 years ago
- A computational framework☆18Jun 1, 2026Updated last month
- ☆12May 30, 2023Updated 3 years ago
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- ☆12Jun 11, 2023Updated 3 years ago
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆25May 23, 2026Updated last month
- ☆27Oct 25, 2023Updated 2 years ago
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆19Jan 16, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated 2 months ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- ☆12Jan 8, 2026Updated 6 months ago
- OncoNetExplainer: Explainable Prediction of Cancer Types Based on Gene Expression Data☆11Feb 28, 2023Updated 3 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- ☆15Feb 28, 2025Updated last year
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 7 months ago
- ☆16Sep 29, 2023Updated 2 years ago
- ☆28Apr 29, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆35Sep 14, 2024Updated last year
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated last year
- Fairness in single-cell data☆21Mar 25, 2026Updated 3 months ago
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated last year
- Quantify and interpret divers of variation in multilevel gene expression experiments☆16Updated this week
- scAB detects multiresolution cell states with clinical significance☆23Nov 14, 2022Updated 3 years ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆71Updated this week
- ☆46May 4, 2024Updated 2 years ago
- Methods for decontamination of single cell data☆65Feb 16, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆68Apr 22, 2026Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 11 months ago
- ☆19Mar 8, 2023Updated 3 years ago
- ☆17Jul 13, 2024Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated 10 months ago
- ☆49Jan 28, 2026Updated 5 months ago
- ☆63Mar 23, 2026Updated 3 months ago