seandavi / ngs-analysisLinks
Fork of https://code.google.com/p/ngs-analysis
☆18Updated 11 years ago
Alternatives and similar repositories for ngs-analysis
Users that are interested in ngs-analysis are comparing it to the libraries listed below
Sorting:
- ☆78Updated 11 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- An awk-like VCF parser☆56Updated last year
- Analysis from kallisto paper☆32Updated 9 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- ☆26Updated 3 months ago
- Genomic Association Tester☆31Updated 2 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ☆38Updated 4 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- BISulfite-seq CUI Toolkit☆24Updated 3 months ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆39Updated 4 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- BigWig and BAM utilities☆97Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago