SamStudio8 / dehumanizerLinks
rapidly rid reads of horrid humans
☆15Updated 4 years ago
Alternatives and similar repositories for dehumanizer
Users that are interested in dehumanizer are comparing it to the libraries listed below
Sorting:
- ☆30Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 4 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 3 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- Split Kmer Analysis☆67Updated 3 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Pan-Genomic Matching Statistics☆55Updated last year
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- taxonomic classifier based on the kraken2 algorithms and more☆45Updated last month
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆46Updated last week
- k-mer counting software☆39Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆67Updated 4 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 7 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Gene-flank analysis tool☆34Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated last week