achtman-lab / GrapeTreeLinks
GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/GrapeTree/MSTree_holder.html
☆83Updated 6 months ago
Alternatives and similar repositories for GrapeTree
Users that are interested in GrapeTree are comparing it to the libraries listed below
Sorting:
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated last year
- IS mapping software☆54Updated 3 years ago
- ☆52Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆76Updated 3 weeks ago
- ☆82Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Estimate metagenomic coverage and sequence diversity☆54Updated 10 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated last month
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆42Updated 7 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- Visualize whole genome alignments as linear maps☆73Updated 9 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- Rapid determination of appropriate reference genomes.☆97Updated 5 months ago
- Synteny Imager☆63Updated 10 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- ☆36Updated 3 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- de.NBI Nanopore Training Course☆20Updated 2 weeks ago
- Collection of scripts for bacterial genomics☆45Updated 5 years ago
- Precise host read removal☆101Updated last week
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago