achtman-lab / GrapeTree
GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/GrapeTree/MSTree_holder.html
☆82Updated 3 months ago
Alternatives and similar repositories for GrapeTree:
Users that are interested in GrapeTree are comparing it to the libraries listed below
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- ☆81Updated last year
- A scalable bacterial genome assembly, annotation and analysis pipeline☆73Updated last year
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆97Updated 2 weeks ago
- Split Kmer Analysis☆63Updated 2 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- ☆52Updated 3 years ago
- IS mapping software☆53Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- A toolbox for comparative genomics.☆102Updated 3 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 11 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Precise host read removal☆93Updated 3 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 10 months ago
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 4 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆36Updated 3 weeks ago
- tools for assessing the accuracy of genome assemblies☆34Updated 11 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆48Updated 8 months ago
- Synteny Imager☆61Updated 7 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆75Updated 7 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆102Updated last year
- Visualize whole genome alignments as linear maps☆71Updated 6 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆71Updated 5 years ago
- Microbiome classification pipeline☆66Updated 2 weeks ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆73Updated last year