Baldridge37 / RNAseq_with_Hisat2_stringtieLinks
RNAseq analysis with Hisat2, stringtie, and ballgown
☆16Updated 5 years ago
Alternatives and similar repositories for RNAseq_with_Hisat2_stringtie
Users that are interested in RNAseq_with_Hisat2_stringtie are comparing it to the libraries listed below
Sorting:
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- Third-generation fusion gene detection☆14Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- ☆23Updated 4 years ago
- ☆13Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆20Updated 6 years ago
- a bucket of bioinformatics scripts☆13Updated last week
- 📊 An R package of RNA-seq workflow☆16Updated 3 years ago
- Enabling differential allele-specific analysis☆11Updated 5 months ago
- ☆24Updated 10 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- Long read to rMATS☆31Updated 2 years ago
- Readme☆10Updated 5 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated 3 months ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated last month
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- ☆14Updated 7 years ago
- ☆22Updated 6 months ago
- ☆22Updated last week
- ☆28Updated 6 months ago
- All kinds of NGS analysis pipeline☆12Updated 5 years ago
- ☆11Updated 4 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- a set of NGS pipelines☆24Updated this week
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 6 years ago
- RNA-seq analysis scripts☆15Updated last month
- ☆19Updated 2 years ago