Baldridge37 / RNAseq_with_Hisat2_stringtieLinks
RNAseq analysis with Hisat2, stringtie, and ballgown
☆17Updated 6 years ago
Alternatives and similar repositories for RNAseq_with_Hisat2_stringtie
Users that are interested in RNAseq_with_Hisat2_stringtie are comparing it to the libraries listed below
Sorting:
- RNA-seq analysis scripts☆15Updated 3 months ago
- ☆22Updated 3 months ago
- Readme☆10Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆15Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- Preprocessing sequencing data for allele-specific analysis☆12Updated 7 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated 3 weeks ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- ☆12Updated 4 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- Enabling differential allele-specific analysis☆11Updated 10 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- a set of NGS pipelines☆24Updated last week
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆15Updated last month
- a bucket of bioinformatics scripts☆13Updated this week
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Transcriptome-wide network☆16Updated 6 years ago
- Filter and prioritize fusion calls☆20Updated last year
- ☆17Updated last year
- GENome Organisation Visual Analytics☆16Updated 3 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 6 years ago
- ☆19Updated last year
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Updated 11 months ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆28Updated 3 months ago