Baldridge37 / RNAseq_with_Hisat2_stringtie
RNAseq analysis with Hisat2, stringtie, and ballgown
☆16Updated 5 years ago
Alternatives and similar repositories for RNAseq_with_Hisat2_stringtie:
Users that are interested in RNAseq_with_Hisat2_stringtie are comparing it to the libraries listed below
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Enabling differential allele-specific analysis☆11Updated last month
- Third-generation fusion gene detection☆14Updated last year
- ☆24Updated 2 years ago
- Readme☆10Updated 4 years ago
- a bucket of bioinformatics scripts☆13Updated 3 months ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- lncRNA-screen☆26Updated 7 years ago
- do some exercise☆11Updated this week
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- ☆11Updated 4 years ago
- All kinds of NGS analysis pipeline☆12Updated 5 years ago
- allele specific DNA methylation haplotype region☆13Updated last year
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Updated last year
- ☆27Updated 2 months ago
- ☆17Updated 2 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- ☆14Updated 6 years ago
- ☆21Updated 2 months ago
- Long read to rMATS☆31Updated last year
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆18Updated 5 years ago
- Codes for the Iso-Seq variant-calling paper☆11Updated last year
- ☆23Updated 3 years ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- Preprocessing sequencing data for allele-specific analysis☆11Updated 3 years ago
- ☆16Updated 6 months ago
- ☆13Updated last year