nickloman / nanoporeLinks
Software for nanopore data analysis
☆30Updated 11 years ago
Alternatives and similar repositories for nanopore
Users that are interested in nanopore are comparing it to the libraries listed below
Sorting:
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆64Updated 2 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Code for nanopore paper☆33Updated 10 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last week
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Updated 10 years ago
- de.NBI Nanopore Training Course☆20Updated 6 months ago
- ☆23Updated 7 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.☆48Updated 9 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 6 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Updated 10 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Maximum likelihood demultiplexing☆50Updated 9 months ago
- tools for error correction and working with long read data☆44Updated 11 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Updated last year
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Updated 2 years ago
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 8 years ago