Software for nanopore data analysis
☆29Sep 10, 2014Updated 12 years ago
Alternatives and similar repositories for nanopore
Users that are interested in nanopore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.☆16Jul 30, 2018Updated 8 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Mar 7, 2019Updated 7 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Oct 6, 2015Updated 10 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 12 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and Accurate Classification of Sequences using Bloom filters☆16Apr 19, 2023Updated 3 years ago
- Various scripts and recipes for working with nanopore data☆35Apr 17, 2016Updated 10 years ago
- ☆25May 21, 2021Updated 5 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 6 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 7 months ago
- Scripts and instructions for submitting annotated microbial genomes to Genbank☆16Feb 23, 2016Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated 2 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- Experimental pipeline for correcting nanopore reads☆39May 23, 2017Updated 9 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project r…☆150Oct 27, 2021Updated 4 years ago
- The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:☆13Oct 20, 2021Updated 4 years ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆53May 11, 2021Updated 5 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated last year
- DNA/RNA pattern matching algorithm☆21Aug 9, 2025Updated last year
- A configurable de novo assembly pipeline☆30Jun 29, 2016Updated 10 years ago
- sequence element (kmer) enrichment analysis☆45Nov 7, 2022Updated 3 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 8 years ago
- Overlap assembler of paired-end DNA sequences generated by Illumina☆23Sep 2, 2016Updated 10 years ago
- ☆12Oct 3, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for nanopore paper☆33Jun 26, 2015Updated 11 years ago
- Programs and documentation for the SAMSA pipeline, version 1.0☆16Dec 16, 2019Updated 6 years ago
- ☆18Nov 16, 2015Updated 10 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 12 years ago
- Locating genetic regions that are "just right"☆17Oct 26, 2016Updated 9 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Feb 12, 2016Updated 10 years ago