SUwonglab / PECALinks
PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
☆45Updated 2 weeks ago
Alternatives and similar repositories for PECA
Users that are interested in PECA are comparing it to the libraries listed below
Sorting:
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ☆51Updated last year
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- ☆30Updated 2 years ago
- ☆35Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆47Updated 9 months ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆33Updated 6 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- ☆12Updated 2 years ago
- ☆68Updated 4 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 4 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 5 years ago
- Fast motif matching in R☆46Updated last year
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- ☆20Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Updated 3 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- ☆32Updated 9 months ago
- Identifying tumor cells at the single-cell level using machine learning☆49Updated 11 months ago
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆39Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- scWGCNA☆61Updated 2 years ago
- ☆18Updated 3 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago