sellerslab / geminiLinks
GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens
☆16Updated 2 years ago
Alternatives and similar repositories for gemini
Users that are interested in gemini are comparing it to the libraries listed below
Sorting:
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Single cell interactive plotting tools☆24Updated 5 years ago
- RNA velocity validation☆22Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- ☆25Updated 3 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- Tools for assessing clustering robustness☆28Updated last month
- Fast motif matching in R☆46Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- ☆37Updated last month
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆26Updated last year
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 4 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆34Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆22Updated last year
- ☆12Updated 6 years ago
- ☆20Updated 8 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago