sellerslab / geminiLinks
GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens
☆16Updated 3 years ago
Alternatives and similar repositories for gemini
Users that are interested in gemini are comparing it to the libraries listed below
Sorting:
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- ☆20Updated 8 years ago
- Explore the cancer relevance of your gene list☆52Updated 2 weeks ago
- Summary statistics for repertoires☆17Updated 2 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- Tools for assessing clustering robustness☆28Updated 2 weeks ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- epigenome analysis to rank transcription factors☆14Updated 6 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆19Updated 2 weeks ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 4 years ago
- Heterogeneity Induced Pre-Processing tOol☆18Updated 4 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- Fast motif matching in R☆46Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated last month
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- RNA velocity validation☆22Updated 3 years ago
- ☆12Updated 6 years ago