Alternatives and similar repositories for Rphenograph

Users that are interested in Rphenograph are comparing it to the libraries listed below

• JEFworks / MUDAN
  Multi-sample Unified Discriminant ANalysis
  ☆74Updated 2 years ago
• YosefLab / scone
  ☆55Updated 7 months ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆59Updated 10 months ago
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆52Updated 4 years ago
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆58Updated 4 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆55Updated 4 years ago
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆61Updated last year
• shenorrLabTRDF / cellAlign
  ☆43Updated 4 years ago
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆43Updated 5 years ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 4 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated last year
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆26Updated 6 years ago
• dgrun / RaceID
  Algorithm for the inference of cell types from single-cell RNA-seq data.
  ☆45Updated 9 years ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆44Updated last year
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆50Updated 2 years ago
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆45Updated last week
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 7 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 2 weeks ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆59Updated 2 months ago
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆67Updated last year
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆84Updated 2 years ago
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 7 years ago
• bioturing / signac
  An analytics package for single cell data
  ☆22Updated 3 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 6 months ago
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆97Updated 7 months ago
• dgrun / StemID
  Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.
  ☆42Updated 8 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated last year
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆38Updated 6 years ago