JinmiaoChenLab / RphenographLinks
Rphenograph: R implementation of the PhenoGraph algorithm
☆48Updated 5 years ago
Alternatives and similar repositories for Rphenograph
Users that are interested in Rphenograph are comparing it to the libraries listed below
Sorting:
- An R-based interface for loom files☆66Updated 5 years ago
- Identify and correct invalid gene symbols☆58Updated 8 months ago
- An r package that works as a wrapper to homologene☆46Updated last year
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆58Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Multi-sample Unified Discriminant ANalysis☆73Updated 2 years ago
- Linear trajectory inference for single-cell RNA-seq☆59Updated last year
- ☆55Updated 5 months ago
- ☆41Updated 4 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- ☆55Updated 4 years ago
- Toolkit for Single-Cell Velocity☆58Updated 3 weeks ago
- Clone of the Bioconductor repository for the scran package.☆43Updated 11 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Explore and share your scRNAseq clustering results☆50Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 7 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆44Updated 8 months ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- Normalize CITEseq Data☆66Updated 4 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- An analytics package for single cell data☆22Updated 3 years ago