Alternatives and similar repositories for Rphenograph:

Users that are interested in Rphenograph are comparing it to the libraries listed below

• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆41Updated 6 months ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆66Updated 4 years ago
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆57Updated 4 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆59Updated 4 months ago
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆59Updated 11 months ago
• Teichlab / cellity
  ☆37Updated 8 years ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• YosefLab / scone
  ☆53Updated last month
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆55Updated 2 months ago
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆50Updated last year
• JEFworks / MUDAN
  Multi-sample Unified Discriminant ANalysis
  ☆73Updated last year
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆43Updated last year
• markrobinsonuzh / cytofWorkflow
  ☆16Updated 11 months ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆35Updated 3 years ago
• elimereu / matchSCore2
  ☆53Updated 4 years ago
• shenorrLabTRDF / cellAlign
  ☆38Updated 4 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆53Updated 4 years ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆56Updated last year
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• dgrun / StemID
  Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.
  ☆42Updated 8 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated 5 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆73Updated 4 years ago
• rhondabacher / SCnorm
  Normalization for single cell RNA-seq data
  ☆47Updated last year
• niaid / dsb
  Normalize CITEseq Data
  ☆65Updated 9 months ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated this week
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated last year
• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆38Updated last year
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆100Updated 2 years ago