lingxuez / URSM
A Unified RNA Sequencing Model (URSM) for joint analysis of single cell and bulk RNA-seq data.
☆11Updated 7 years ago
Alternatives and similar repositories for URSM:
Users that are interested in URSM are comparing it to the libraries listed below
- ☆28Updated 2 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 5 years ago
- ☆16Updated 6 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆21Updated 3 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Modelling DNA methylation profiles☆22Updated 4 years ago
- ☆28Updated 6 years ago
- ☆19Updated 7 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 4 months ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆29Updated 5 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆22Updated 7 years ago
- ☆11Updated 3 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated last month
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆53Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- ☆16Updated 3 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- ☆23Updated 5 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated last year
- Single cell interactive plotting tools☆23Updated 4 years ago