PickyBinders / PickyBinderLinks
Docking Tool Benchmarking Workflow
☆24Updated last year
Alternatives and similar repositories for PickyBinder
Users that are interested in PickyBinder are comparing it to the libraries listed below
Sorting:
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Updated 4 years ago
- ☆36Updated 2 years ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆40Updated last year
- Scores for Hydrophobicity and Charges based on SASAs☆39Updated 5 months ago
- Code for deep learning guided design of dynamic proteins☆31Updated last year
- Fast and accurate molecular docking with an AI pose scoring function☆42Updated last year
- Code for ApoDock☆21Updated 7 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 5 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 7 months ago
- Interaction profile extraction, scoring, alignment and evaluation of ShEPhERD. [ICLR 2025]☆30Updated last month
- A benchmark for 3D biomolecular structure prediction models☆67Updated 6 months ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 5 months ago
- Extension of ThermoMPNN for double mutant predictions☆47Updated last month
- scripts to find PBD structures for cancer driver proteins☆31Updated this week
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆52Updated 4 months ago
- Making Protein folding accessible to all!☆24Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆35Updated last year
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- Fast, accurate, and deterministic protein side-chain packing☆36Updated 8 months ago
- ☆53Updated 7 months ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated last year
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆32Updated 2 weeks ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Updated 2 weeks ago
- ☆42Updated 3 months ago
- Binding pocket optimization based on force fields and docking scoring functions☆37Updated 8 months ago
- Cyclic-peptide - protein complexes benchmark and associated scripts and data☆13Updated last year
- ☆39Updated last year
- Physical energy function for protein sequence design☆33Updated 2 years ago
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆25Updated 2 months ago