Alternatives and similar repositories for PFresGO

Users that are interested in PFresGO are comparing it to the libraries listed below

• Bitbol-Lab / Phylogeny-MSA-Transformer
  Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…
  ☆17Updated 8 months ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated 2 weeks ago
• biomed-AI / GPSite
  Geometry-aware protein binding site predictor
  ☆21Updated last year
• lyjps / Struct2GO
  Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information
  ☆27Updated last year
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• kansil / PROBE
  Trainable representation analysis study repository
  ☆44Updated 3 years ago
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆35Updated this week
• tymor22 / tm-vec
  ☆68Updated 11 months ago
• bio-ontology-research-group / deepgozero
  DeepGO with Fuzzy DL
  ☆30Updated 3 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆30Updated last year
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆49Updated 11 months ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆53Updated 11 months ago
• yanzhanglab / Graph2GO
  Graph-based representation learning method for protein function prediction
  ☆24Updated 3 weeks ago
• pfnet-research / GenerRNA
  ☆19Updated 11 months ago
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆17Updated 2 years ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated 2 years ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆33Updated 2 weeks ago
• Superzchen / iFeatureOmega-CLI
  iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…
  ☆34Updated 2 years ago
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated 3 weeks ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated 3 months ago
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆15Updated 8 months ago
• Shen-Lab / TALE
  Transformer-based protein function Annotation with joint feature-Label Embedding
  ☆35Updated 9 months ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆75Updated 6 months ago
• gzBiomedical / EpiScan
  Antibody-Specific Epitope Mapping
  ☆14Updated last week
• sinc-lab / anc2vec
  Method for constructing embeddings of GO terms.
  ☆14Updated 3 years ago
• clairemcwhite / vcmsa
  ☆30Updated last year
• TattaBio / gLM2
  ☆71Updated 11 months ago
• kWeissenow / EMBER2
  Alignment-free structure prediction using protein language models
  ☆22Updated 2 years ago
• Doudna-lab / GARNET_DL
  ☆36Updated 8 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆52Updated last month